Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30863
         (723 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069581-1|AAL39726.1|  642|Drosophila melanogaster LD32037p pro...    44   2e-04
AF154417-1|AAD38396.1|  644|Drosophila melanogaster hypoxia-indu...    44   2e-04
AF020426-1|AAB88882.1|  644|Drosophila melanogaster basic helix-...    44   2e-04
AE014297-861|AAF54329.1|  642|Drosophila melanogaster CG11987-PA...    44   2e-04
AB002556-1|BAA22868.1|  642|Drosophila melanogaster bHLH-PAS tra...    44   2e-04

>AY069581-1|AAL39726.1|  642|Drosophila melanogaster LD32037p
           protein.
          Length = 642

 Score = 44.4 bits (100), Expect = 2e-04
 Identities = 24/40 (60%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
 Frame = +2

Query: 5   PEGTHAPH--ELSDMLQILDQSGTATFEDLNINMFNSNFE 118
           P G   P   E SDMLQ+LD + T TFEDLNINMF++ FE
Sbjct: 604 PAGAGQPQGQEFSDMLQMLDHTPT-TFEDLNINMFSTPFE 642


>AF154417-1|AAD38396.1|  644|Drosophila melanogaster
           hypoxia-inducible factor 1b protein.
          Length = 644

 Score = 44.4 bits (100), Expect = 2e-04
 Identities = 24/40 (60%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
 Frame = +2

Query: 5   PEGTHAPH--ELSDMLQILDQSGTATFEDLNINMFNSNFE 118
           P G   P   E SDMLQ+LD + T TFEDLNINMF++ FE
Sbjct: 606 PAGAGQPQGQEFSDMLQMLDHTPT-TFEDLNINMFSTPFE 644


>AF020426-1|AAB88882.1|  644|Drosophila melanogaster basic
           helix-loop-helix PAS protein protein.
          Length = 644

 Score = 44.4 bits (100), Expect = 2e-04
 Identities = 24/40 (60%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
 Frame = +2

Query: 5   PEGTHAPH--ELSDMLQILDQSGTATFEDLNINMFNSNFE 118
           P G   P   E SDMLQ+LD + T TFEDLNINMF++ FE
Sbjct: 606 PAGAGQPQGQEFSDMLQMLDHTPT-TFEDLNINMFSTPFE 644


>AE014297-861|AAF54329.1|  642|Drosophila melanogaster CG11987-PA
           protein.
          Length = 642

 Score = 44.4 bits (100), Expect = 2e-04
 Identities = 24/40 (60%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
 Frame = +2

Query: 5   PEGTHAPH--ELSDMLQILDQSGTATFEDLNINMFNSNFE 118
           P G   P   E SDMLQ+LD + T TFEDLNINMF++ FE
Sbjct: 604 PAGAGQPQGQEFSDMLQMLDHTPT-TFEDLNINMFSTPFE 642


>AB002556-1|BAA22868.1|  642|Drosophila melanogaster bHLH-PAS
           transcription factor protein.
          Length = 642

 Score = 44.4 bits (100), Expect = 2e-04
 Identities = 24/40 (60%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
 Frame = +2

Query: 5   PEGTHAPH--ELSDMLQILDQSGTATFEDLNINMFNSNFE 118
           P G   P   E SDMLQ+LD + T TFEDLNINMF++ FE
Sbjct: 604 PAGAGQPQGQEFSDMLQMLDHTPT-TFEDLNINMFSTPFE 642


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,290,024
Number of Sequences: 53049
Number of extensions: 568980
Number of successful extensions: 1029
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3231892257
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)