Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30863
         (723 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016688-5|AAB66073.1|  666|Caenorhabditis elegans Hypothetical ...    29   4.4  
AC024809-9|AAO12399.1|  700|Caenorhabditis elegans Hypothetical ...    28   7.8  
AC024809-8|AAF59546.2|  741|Caenorhabditis elegans Hypothetical ...    28   7.8  

>AF016688-5|AAB66073.1|  666|Caenorhabditis elegans Hypothetical
           protein F18A12.7 protein.
          Length = 666

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = +1

Query: 319 HVPGRFAT--LTLACQLF*DLIWLCSTE-IKCNIPIWLECSSIMIRRALITKMSINFF 483
           HVP +  T  L L  Q   +  W    + +K N  +   CSS+ I+ +LIT   IN F
Sbjct: 524 HVPSQKYTQKLLLEDQEHVEYRWTVKAQSLKLNDLLASNCSSLTIQNSLITSQDINLF 581


>AC024809-9|AAO12399.1|  700|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.2b protein.
          Length = 700

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 108 ELNMFMLRSSKVAVPLWSRICNMSESSCGACV 13
           EL   M    +VA   WS++C++ ++  GACV
Sbjct: 333 ELRAPMTSFERVAEERWSQMCSVCDTRQGACV 364


>AC024809-8|AAF59546.2|  741|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.2a protein.
          Length = 741

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 108 ELNMFMLRSSKVAVPLWSRICNMSESSCGACV 13
           EL   M    +VA   WS++C++ ++  GACV
Sbjct: 374 ELRAPMTSFERVAEERWSQMCSVCDTRQGACV 405


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,484,225
Number of Sequences: 27780
Number of extensions: 307291
Number of successful extensions: 605
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)