Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30860
(309 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_A1BQ56 Cluster: Ribosomal protein L27a; n=4; Bilateria|... 79 3e-14
UniRef50_P46776 Cluster: 60S ribosomal protein L27a; n=204; Euka... 76 2e-13
UniRef50_Q00454 Cluster: 60S ribosomal protein L27a; n=3; Eukary... 69 2e-11
UniRef50_Q4P992 Cluster: Putative uncharacterized protein; n=1; ... 55 3e-07
UniRef50_Q00V89 Cluster: 60s ribosomal protein L15/L27; n=2; Ost... 53 1e-06
UniRef50_Q9LR33 Cluster: 60S ribosomal protein L27a-2; n=56; Euk... 49 2e-05
UniRef50_Q9LPV3 Cluster: Putative 60S ribosomal protein L27a-1; ... 36 0.13
UniRef50_A7QSF4 Cluster: Chromosome chr12 scaffold_159, whole ge... 33 1.6
UniRef50_UPI0000F1F127 Cluster: PREDICTED: hypothetical protein;... 32 2.2
UniRef50_A4ANL3 Cluster: Putative lipoprotein; n=1; Flavobacteri... 31 3.8
UniRef50_UPI000023D651 Cluster: hypothetical protein FG01771.1; ... 31 6.6
>UniRef50_A1BQ56 Cluster: Ribosomal protein L27a; n=4;
Bilateria|Rep: Ribosomal protein L27a - Ascaris suum
(Pig roundworm) (Ascaris lumbricoides)
Length = 133
Score = 78.6 bits (185), Expect = 3e-14
Identities = 41/84 (48%), Positives = 47/84 (55%)
Frame = +2
Query: 2 RNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXP 181
RNFH RKN +CP +NLDKLW+LVSE+TR YA D K PVI++VKA P
Sbjct: 45 RNFHVRKNGLYCPTVNLDKLWSLVSEKTRTTYAEKKD-KAPVIDVVKAGYFKVLGKGLLP 103
Query: 182 KQPVIVXXXXXXXXXXXXXXDVGG 253
KQPVIV VGG
Sbjct: 104 KQPVIVKAKFFSRTAEQKIKGVGG 127
>UniRef50_P46776 Cluster: 60S ribosomal protein L27a; n=204;
Eukaryota|Rep: 60S ribosomal protein L27a - Homo sapiens
(Human)
Length = 148
Score = 75.8 bits (178), Expect = 2e-13
Identities = 34/84 (40%), Positives = 48/84 (57%)
Frame = +2
Query: 2 RNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXP 181
+++H ++N++FCP +NLDKLWTLVSEQTR+ A G P+I++V++ P
Sbjct: 59 KHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLP 118
Query: 182 KQPVIVXXXXXXXXXXXXXXDVGG 253
KQPVIV VGG
Sbjct: 119 KQPVIVKAKFFSRRAEEKIKSVGG 142
>UniRef50_Q00454 Cluster: 60S ribosomal protein L27a; n=3;
Eukaryota|Rep: 60S ribosomal protein L27a - Tetrahymena
thermophila
Length = 149
Score = 68.9 bits (161), Expect = 2e-11
Identities = 33/66 (50%), Positives = 41/66 (62%)
Frame = +2
Query: 2 RNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXP 181
R FH +KN CPV+N+DKLW+LVS+ TR KYA KVPVI++ KA P
Sbjct: 61 RTFHLKKNPLHCPVVNIDKLWSLVSDATRQKYAE-DKKKVPVIDVTKAGFFKVLGKGRLP 119
Query: 182 KQPVIV 199
QPV+V
Sbjct: 120 NQPVVV 125
>UniRef50_Q4P992 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 187
Score = 55.2 bits (127), Expect = 3e-07
Identities = 32/86 (37%), Positives = 42/86 (48%)
Frame = +2
Query: 2 RNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXP 181
R+FH +N +F PV+NLDKLWTLV + R K +A +VPVI+ + A P
Sbjct: 99 RHFHLTRNSSFRPVVNLDKLWTLVPAEQR-KGLTADSTEVPVIDTLAAGYGKVLGKGRLP 157
Query: 182 KQPVIVXXXXXXXXXXXXXXDVGGVV 259
P IV + GGVV
Sbjct: 158 ALPCIVKARWVSSLAEKKIKEAGGVV 183
>UniRef50_Q00V89 Cluster: 60s ribosomal protein L15/L27; n=2;
Ostreococcus|Rep: 60s ribosomal protein L15/L27 -
Ostreococcus tauri
Length = 198
Score = 52.8 bits (121), Expect = 1e-06
Identities = 28/84 (33%), Positives = 39/84 (46%)
Frame = +2
Query: 2 RNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXP 181
R+FH KN+ CP +N+DKLWTLV + R + A + PVI++ P
Sbjct: 110 RHFHKLKNQTVCPTINIDKLWTLVGTEKREECAK-NTSQAPVIDLTDHGIFKLLGKGQLP 168
Query: 182 KQPVIVXXXXXXXXXXXXXXDVGG 253
QPV+V +VGG
Sbjct: 169 NQPVVVKCRYISKLAEKKIKEVGG 192
>UniRef50_Q9LR33 Cluster: 60S ribosomal protein L27a-2; n=56;
Eukaryota|Rep: 60S ribosomal protein L27a-2 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 146
Score = 49.2 bits (112), Expect = 2e-05
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Frame = +2
Query: 2 RNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXP 181
R FH +NK FCP++NLDKLW+LV E + K S+ D VP+I++ + P
Sbjct: 59 RYFHKLRNKFFCPIVNLDKLWSLVPEDVKAK--SSKD-NVPLIDVTQHGFFKVLGKGHLP 115
Query: 182 K-QPVIVXXXXXXXXXXXXXXDVGGVV 259
+ +P +V + GG V
Sbjct: 116 ENKPFVVKAKLISKTAEKKIKEAGGAV 142
>UniRef50_Q9LPV3 Cluster: Putative 60S ribosomal protein L27a-1;
n=1; Arabidopsis thaliana|Rep: Putative 60S ribosomal
protein L27a-1 - Arabidopsis thaliana (Mouse-ear cress)
Length = 104
Score = 36.3 bits (80), Expect = 0.13
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = +2
Query: 2 RNFHFRKNKNFCPVLNLDKLWTLV 73
R FH +NK +C ++NLDKLW++V
Sbjct: 40 RYFHKLRNKFYCQIVNLDKLWSMV 63
>UniRef50_A7QSF4 Cluster: Chromosome chr12 scaffold_159, whole
genome shotgun sequence; n=3; Vitis vinifera|Rep:
Chromosome chr12 scaffold_159, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 151
Score = 32.7 bits (71), Expect = 1.6
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +2
Query: 2 RNFHFRKNKNFCPVLNLDKLWTLV 73
R+FH + K CP++++DKLW++V
Sbjct: 41 RHFHKLRIKLHCPIVHIDKLWSMV 64
>UniRef50_UPI0000F1F127 Cluster: PREDICTED: hypothetical protein;
n=7; Danio rerio|Rep: PREDICTED: hypothetical protein -
Danio rerio
Length = 656
Score = 32.3 bits (70), Expect = 2.2
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 29 NFCPVLNLDKLWTLVSEQTRLKYASAPDGKV 121
NFCP L D WT++S+ + Y S+PD V
Sbjct: 116 NFCPWLEED--WTMLSDDSTTPYESSPDNSV 144
>UniRef50_A4ANL3 Cluster: Putative lipoprotein; n=1;
Flavobacteriales bacterium HTCC2170|Rep: Putative
lipoprotein - Flavobacteriales bacterium HTCC2170
Length = 535
Score = 31.5 bits (68), Expect = 3.8
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -1
Query: 243 SLIFFSADFEKNFAFTMTGCLGSLPL 166
SL FFS D + N A T GCLG+ P+
Sbjct: 312 SLYFFSLDTKDNSACTSAGCLGAWPV 337
>UniRef50_UPI000023D651 Cluster: hypothetical protein FG01771.1;
n=1; Gibberella zeae PH-1|Rep: hypothetical protein
FG01771.1 - Gibberella zeae PH-1
Length = 202
Score = 30.7 bits (66), Expect = 6.6
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 121 PRHQYCQSWILQVARQRQTPQTTCHSKSKVLLKISREENQGC 246
PR +Y + L +Q TPQ CH +L+ ++RE C
Sbjct: 21 PRFEYPDTVPLVKRQQPGTPQYACHEDCGLLITLARENKDFC 62
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 261,150,332
Number of Sequences: 1657284
Number of extensions: 4211579
Number of successful extensions: 9557
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 9406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9554
length of database: 575,637,011
effective HSP length: 79
effective length of database: 444,711,575
effective search space used: 10228366225
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -