Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30860
         (309 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B 27a|Schi...    58   4e-10
SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein L27a.2/L28A|Sc...    55   2e-09
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ...    26   1.5  
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    25   3.4  
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce...    25   3.4  
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    25   3.4  
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2...    24   4.5  
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe...    24   4.5  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    24   5.9  

>SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B
           27a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 57.6 bits (133), Expect = 4e-10
 Identities = 30/86 (34%), Positives = 39/86 (45%)
 Frame = +2

Query: 2   RNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXP 181
           R FH  KN  + P +NLD+LWTLV  +TR KY        PVIN++++           P
Sbjct: 59  RRFHLMKNPLWRPTVNLDRLWTLVPNETREKYLGKNTEVAPVINVLQSGYGKVLGKGRLP 118

Query: 182 KQPVIVXXXXXXXXXXXXXXDVGGVV 259
             PVI+                GGVV
Sbjct: 119 DTPVIIQTRYVSRRAEEKIKQAGGVV 144


>SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein
           L27a.2/L28A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 148

 Score = 55.2 bits (127), Expect = 2e-09
 Identities = 29/86 (33%), Positives = 39/86 (45%)
 Frame = +2

Query: 2   RNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXP 181
           R FH  KN  + P +NLD+LWTL+  + R KY        PVIN++++           P
Sbjct: 59  RRFHLMKNPLWRPTVNLDRLWTLLPNEARDKYLGKNTEVAPVINVLQSGYGKVLGKGRLP 118

Query: 182 KQPVIVXXXXXXXXXXXXXXDVGGVV 259
           + PVIV                GGVV
Sbjct: 119 ETPVIVQTRYVSRRAEEKIKQAGGVV 144


>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 276 YLRR*YTTPPTSLIFFSADFEKNF 205
           Y R   T PPTS  F+  D  KN+
Sbjct: 248 YPRTRLTKPPTSSAFYENDMSKNY 271


>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 47  NLDKLWTLVSEQTRLKYASAPDGKVP 124
           NL K W  +S     K++  P+G +P
Sbjct: 323 NLKKQWASISPNITYKHSYNPNGTIP 348


>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 139 DNIDDGDLAIWSRCILQPRL 80
           DN+D+ DLA +S+ I +P L
Sbjct: 2   DNLDEDDLAFFSKPIKKPPL 21


>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 578

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = -1

Query: 291 DIITYYLRR*YTTPPTSLIFFSADFEKNFAFTMTGCL--GSLPLPSNL*YPALTILMTGT 118
           D+++ YL    +T P ++IF                +    LPLP+ + Y +  + +T +
Sbjct: 191 DVLSSYLYLLKSTKPENIIFMGDSSGAGLIVASLVLIRDSKLPLPAGVVYDSPWVDLTHS 250

Query: 117 LPS 109
           LPS
Sbjct: 251 LPS 253


>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
           Mei2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 750

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = -1

Query: 258 TTPPTSLIFFSADFEKNFAFTMTGCLGSLPLPSNL*Y-PALTILMTGTLP 112
           T+P  S   F  D EK      +  L S  L +N  Y P  T+L++G  P
Sbjct: 12  TSPSPSDSTFQVDMEKTMHALPSSLLDSPLLSTNEHYPPKSTLLLSGPSP 61


>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 511

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 168 LPSNL*YPALTILMTGTLPSGAD 100
           LPS   +PALT+  TG + S  D
Sbjct: 379 LPSYNVFPALTVFFTGIMMSAHD 401


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +2

Query: 20   KNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVK 142
            +NK+F   L+LD+L   +S    L   S     V VI+  K
Sbjct: 1532 ENKSFSATLDLDRLLFRISVYDLLLLQSIAQASVSVISSYK 1572


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,102,546
Number of Sequences: 5004
Number of extensions: 18602
Number of successful extensions: 46
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)