Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30860
(309 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1250 - 25183375-25183815 42 7e-05
03_04_0027 + 16593133-16593573 41 2e-04
02_01_0563 + 4134954-4135388 39 0.001
11_03_0135 - 10547460-10547558,10547926-10548086,10548183-105483... 28 1.7
08_02_1146 + 24678142-24678258,24678550-24678587,24678997-246790... 27 2.3
03_05_0070 - 20478396-20478505,20478605-20478780,20481162-204812... 27 3.0
05_01_0338 + 2665412-2665564,2665647-2665766,2666344-2666397,266... 26 5.2
10_08_0894 - 21365629-21365766,21365849-21365950,21366042-213662... 26 6.9
07_03_0839 + 21916842-21917852,21917944-21919602 25 9.2
01_07_0325 - 42745611-42745700,42745939-42745971,42746069-427461... 25 9.2
01_01_0025 + 188915-189132,190625-190705,191350-191506,191958-19... 25 9.2
>07_03_1250 - 25183375-25183815
Length = 146
Score = 42.3 bits (95), Expect = 7e-05
Identities = 18/66 (27%), Positives = 37/66 (56%)
Frame = +2
Query: 2 RNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXP 181
R FH +NK + P +N+++LW++V + + A A GK P++++ + P
Sbjct: 59 RYFHRLRNKFYSPAVNVERLWSMVPAEQAAEAAGA--GKAPLLDVTQFGYFKVLGKGLLP 116
Query: 182 KQPVIV 199
++P++V
Sbjct: 117 EKPIVV 122
>03_04_0027 + 16593133-16593573
Length = 146
Score = 40.7 bits (91), Expect = 2e-04
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +2
Query: 2 RNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVK-AXXXXXXXXXXX 178
R FH N+ CP +N+++LW++V K A A GK PVI++ +
Sbjct: 59 RYFHKLSNRFHCPAVNVERLWSMVPTD---KAAEAGAGKAPVIDVTQFGYTKVLGKGMLP 115
Query: 179 PKQPVIV 199
P++P++V
Sbjct: 116 PQRPIVV 122
>02_01_0563 + 4134954-4135388
Length = 144
Score = 38.7 bits (86), Expect = 0.001
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +2
Query: 2 RNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVK-AXXXXXXXXXXX 178
R FH N+ CP +N+++LW++V + A A GK PVI++ +
Sbjct: 59 RYFHRLSNRFHCPAVNVERLWSMVPAE-----AGAGAGKAPVIDVTQFGYTKVLGKGMLP 113
Query: 179 PKQPVIV 199
P++P++V
Sbjct: 114 PERPIVV 120
>11_03_0135 -
10547460-10547558,10547926-10548086,10548183-10548306,
10548566-10548729,10549803-10549883,10549973-10550097,
10550200-10550430,10550566-10550588,10551055-10551539,
10551678-10552075,10552903-10552988,10553120-10553397,
10553494-10553714,10553927-10554018,10554148-10554213,
10555855-10556022
Length = 933
Score = 27.9 bits (59), Expect = 1.7
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 85 EAEVCICSRWQ-GPRHQYCQSWILQVARQRQTPQTTCHSK 201
E ++ +CSR G H YC ++Q + + TCHS+
Sbjct: 288 EEKLAVCSRCNDGAEHIYCMRVMMQEVPKAKWLCETCHSE 327
>08_02_1146 +
24678142-24678258,24678550-24678587,24678997-24679012,
24679874-24680002,24680073-24680229,24680337-24680530,
24680668-24680916,24681196-24681309,24681949-24681990,
24682402-24682572,24682932-24683104,24683378-24683624,
24684046-24684130,24684401-24684510,24684714-24684977,
24685885-24685950,24686431-24686525,24686780-24686858
Length = 781
Score = 27.5 bits (58), Expect = 2.3
Identities = 9/27 (33%), Positives = 12/27 (44%)
Frame = +1
Query: 118 GPRHQYCQSWILQVARQRQTPQTTCHS 198
GP H WI + +Q P+ HS
Sbjct: 258 GPMHNAADKWITEFGKQNNNPEEWAHS 284
>03_05_0070 -
20478396-20478505,20478605-20478780,20481162-20481265,
20481346-20481504,20481718-20481857,20482222-20482311,
20482902-20482970,20484295-20484516,20486175-20486293,
20486377-20486492,20488058-20488146,20488790-20488883
Length = 495
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/43 (32%), Positives = 18/43 (41%)
Frame = +1
Query: 127 HQYCQSWILQVARQRQTPQTTCHSKSKVLLKISREENQGCGWC 255
H Y S ILQ QR + + V + I N+G WC
Sbjct: 437 HTYLDSAILQHQLQRLSEHNLLKATPSVFVVIQAIVNEGAVWC 479
>05_01_0338 +
2665412-2665564,2665647-2665766,2666344-2666397,
2666583-2666660,2667608-2667652,2668327-2668434,
2668629-2668706,2669352-2669457,2669622-2669680,
2670465-2670564,2670932-2671011,2671132-2671188,
2671321-2671424,2671799-2671886,2671971-2672056,
2672140-2672185,2672246-2672317,2672541-2672601,
2672692-2672936
Length = 579
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 261 YTTPPTSLIFFSADFEKNFAFTMTGCLGSL 172
Y P T + F D++KN +T CLG L
Sbjct: 279 YVIPTTVVSHFLNDYQKNGKYTGFPCLGVL 308
>10_08_0894 - 21365629-21365766,21365849-21365950,21366042-21366284,
21366685-21366813,21366999-21367103,21367196-21367387,
21367486-21367639,21368148-21368209,21368291-21368437,
21368517-21368564,21369091-21369228,21369305-21369451,
21370579-21370665,21370754-21370861,21370941-21371041,
21371870-21371996,21372820-21372936,21373029-21373106,
21373240-21373284,21373637-21373756,21373838-21373964,
21374033-21374253,21374347-21374529,21374772-21374924,
21375051-21375146,21375226-21375331,21375410-21375492,
21375576-21375728,21375819-21376058,21376367-21376414,
21376782-21376928,21377007-21377115,21377200-21377345,
21377715-21377809,21377944-21378049,21378177-21378368,
21378456-21378686,21378772-21378866,21379426-21379529,
21380040-21380284,21380300-21380347,21380376-21380480,
21380630-21380767,21381458-21381649,21381738-21381914,
21382001-21382129,21382203-21382316,21382407-21382746,
21382836-21383064,21383155-21383455,21384311-21384358,
21387963-21388355
Length = 2493
Score = 25.8 bits (54), Expect = 6.9
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 130 QYCQSWILQVARQRQTPQTTCHSKSKVLLKISREENQ 240
QYC ILQ++ R T + +VL KIS +N+
Sbjct: 907 QYCNH-ILQISHLRATHAELVAAIERVLAKISSSQNE 942
>07_03_0839 + 21916842-21917852,21917944-21919602
Length = 889
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = -1
Query: 150 YPALTILMTGTLPSGADAYFSLVCSETNVQSLSKF 46
YP + M L +G YF L +T S KF
Sbjct: 732 YPTAVLYMALKLVTGKGIYFRLTSKQTTASSGDKF 766
>01_07_0325 -
42745611-42745700,42745939-42745971,42746069-42746182,
42746325-42746417,42746502-42746597,42746820-42746924,
42747027-42747284,42748740-42749402
Length = 483
Score = 25.4 bits (53), Expect = 9.2
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = -3
Query: 184 FGEFAFA*QLVVSSFDNIDDGDLAIWSRCILQPRLFRD 71
F EF + V F +DD IW R Q FRD
Sbjct: 373 FHEFVSSMNYDVCFFKELDDVYFEIWQRVTKQKMSFRD 410
>01_01_0025 +
188915-189132,190625-190705,191350-191506,191958-192161,
192248-192356,192401-192496,192724-193994,194200-194384,
194619-195055,197034-197077,197830-199036,199253-199479
Length = 1411
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1
Query: 150 YPALTILMTGTLPSGADAYFSLVCSETNVQS 58
+P+ I + L + D + S C ETNV S
Sbjct: 531 FPSAIIKLVSELKTDCDLHESFYCVETNVDS 561
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,077,207
Number of Sequences: 37544
Number of extensions: 118619
Number of successful extensions: 338
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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