Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30860
         (309 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4350| Best HMM Match : L15 (HMM E-Value=3.9e-10)                    72   1e-13
SB_10900| Best HMM Match : I-set (HMM E-Value=0)                       27   2.4  
SB_28996| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_40134| Best HMM Match : Calx-beta (HMM E-Value=0)                   25   9.5  

>SB_4350| Best HMM Match : L15 (HMM E-Value=3.9e-10)
          Length = 173

 Score = 71.7 bits (168), Expect = 1e-13
 Identities = 34/66 (51%), Positives = 42/66 (63%)
 Frame = +2

Query: 2   RNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXP 181
           R+FH  +N    P +NLDK+W+LVSEQTR  Y +  DG VPVI++VKA           P
Sbjct: 84  RHFHLTRNAYHKPSINLDKVWSLVSEQTRQNYKNKKDGPVPVIDVVKAGYYKVLGKGLLP 143

Query: 182 KQPVIV 199
           KQPVIV
Sbjct: 144 KQPVIV 149


>SB_10900| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1642

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
 Frame = -1

Query: 261 YTTPPTSLIFFSADFEKNFAFTMTGCLGSLPLPSNL*YPALTILMTG--TLPSGADAYFS 88
           +T   +S    + D     A T+T  LG++ LP N  YP  ++       LP G     +
Sbjct: 751 FTMETSSTDLVTCDVTGTPAPTVTWYLGNVKLPQNAKYPGYSVTRDDKLRLPIGTLKNNT 810

Query: 87  LVCSETNVQSLSKF 46
             C+ +N  +  +F
Sbjct: 811 FYCNASNPHASMRF 824


>SB_28996| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 272

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 163 RQRQTPQTTCHSKS-KVLLKISREENQGCGWCCVL 264
           R+R++     ++KS  VLL   REE  GCG   VL
Sbjct: 42  RERESGAYGSNAKSLPVLLSFGREEGGGCGASVVL 76


>SB_40134| Best HMM Match : Calx-beta (HMM E-Value=0)
          Length = 517

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 41  VLNLDKLWTLVSEQTRLKYASAPDGKVPVI 130
           +LN DK  T +  QT     S  DG VP++
Sbjct: 175 ILNDDKAQTFIKFQTNTIQVSEGDGVVPLV 204


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,128,277
Number of Sequences: 59808
Number of extensions: 140059
Number of successful extensions: 332
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 332
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 389827759
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)