Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30860
(309 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC087079-8|AAK27871.1| 88|Caenorhabditis elegans Hypothetical ... 52 6e-08
AC087079-7|AAK27870.1| 145|Caenorhabditis elegans Hypothetical ... 52 6e-08
Z82258-4|CAL44968.1| 1467|Caenorhabditis elegans Hypothetical pr... 28 1.2
Z82258-3|CAL44967.1| 1538|Caenorhabditis elegans Hypothetical pr... 28 1.2
AL023835-19|CAL44978.1| 1467|Caenorhabditis elegans Hypothetical... 28 1.2
AL023835-18|CAL44977.1| 1538|Caenorhabditis elegans Hypothetical... 28 1.2
AF067219-10|AAC17031.1| 753|Caenorhabditis elegans Hypothetical... 28 1.5
AF003133-2|AAB54136.1| 753|Caenorhabditis elegans Hypothetical ... 28 1.5
U39472-5|AAK31393.1| 128|Caenorhabditis elegans Hypothetical pr... 27 2.7
Z81465-2|CAB03861.1| 1642|Caenorhabditis elegans Hypothetical pr... 25 8.1
Z81067-5|CAD92378.1| 965|Caenorhabditis elegans Hypothetical pr... 25 8.1
>AC087079-8|AAK27871.1| 88|Caenorhabditis elegans Hypothetical
protein Y37E3.8b protein.
Length = 88
Score = 52.4 bits (120), Expect = 6e-08
Identities = 25/66 (37%), Positives = 38/66 (57%)
Frame = +2
Query: 2 RNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXP 181
R FH KN+++CP +N+++LW+LV ++ R K A GK PVI+ K P
Sbjct: 2 RVFHLNKNQHYCPTVNVERLWSLVPQEVRDK---ATGGKSPVIDCTKLGYFKVLGKGLLP 58
Query: 182 KQPVIV 199
+ P+IV
Sbjct: 59 ETPLIV 64
>AC087079-7|AAK27870.1| 145|Caenorhabditis elegans Hypothetical
protein Y37E3.8a protein.
Length = 145
Score = 52.4 bits (120), Expect = 6e-08
Identities = 25/66 (37%), Positives = 38/66 (57%)
Frame = +2
Query: 2 RNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXP 181
R FH KN+++CP +N+++LW+LV ++ R K A GK PVI+ K P
Sbjct: 59 RVFHLNKNQHYCPTVNVERLWSLVPQEVRDK---ATGGKSPVIDCTKLGYFKVLGKGLLP 115
Query: 182 KQPVIV 199
+ P+IV
Sbjct: 116 ETPLIV 121
>Z82258-4|CAL44968.1| 1467|Caenorhabditis elegans Hypothetical
protein Y37A1B.17b protein.
Length = 1467
Score = 28.3 bits (60), Expect = 1.2
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 142 SWILQVARQRQTPQTTCHSKSKVLLKISREENQGC 246
SW+ +++ Q P+T C ++K+ REE C
Sbjct: 5 SWV-RISNATQDPETRCSVAQDQIVKVVREEGDWC 38
>Z82258-3|CAL44967.1| 1538|Caenorhabditis elegans Hypothetical
protein Y37A1B.17a protein.
Length = 1538
Score = 28.3 bits (60), Expect = 1.2
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 142 SWILQVARQRQTPQTTCHSKSKVLLKISREENQGC 246
SW+ +++ Q P+T C ++K+ REE C
Sbjct: 5 SWV-RISNATQDPETRCSVAQDQIVKVVREEGDWC 38
>AL023835-19|CAL44978.1| 1467|Caenorhabditis elegans Hypothetical
protein Y37A1B.17b protein.
Length = 1467
Score = 28.3 bits (60), Expect = 1.2
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 142 SWILQVARQRQTPQTTCHSKSKVLLKISREENQGC 246
SW+ +++ Q P+T C ++K+ REE C
Sbjct: 5 SWV-RISNATQDPETRCSVAQDQIVKVVREEGDWC 38
>AL023835-18|CAL44977.1| 1538|Caenorhabditis elegans Hypothetical
protein Y37A1B.17a protein.
Length = 1538
Score = 28.3 bits (60), Expect = 1.2
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 142 SWILQVARQRQTPQTTCHSKSKVLLKISREENQGC 246
SW+ +++ Q P+T C ++K+ REE C
Sbjct: 5 SWV-RISNATQDPETRCSVAQDQIVKVVREEGDWC 38
>AF067219-10|AAC17031.1| 753|Caenorhabditis elegans Hypothetical
protein R12E2.10 protein.
Length = 753
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 88 AEVCICSRWQGPRHQYCQSWILQVARQRQ 174
AE+ ICS +GP ++Y +Q RQR+
Sbjct: 613 AEIAICSLLRGPTYKYPVQRAVQFLRQRR 641
>AF003133-2|AAB54136.1| 753|Caenorhabditis elegans Hypothetical
protein T21E3.1 protein.
Length = 753
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 88 AEVCICSRWQGPRHQYCQSWILQVARQRQ 174
AE+ ICS +GP ++Y +Q RQR+
Sbjct: 613 AEIAICSLLRGPTYKYPVQRAVQFLRQRR 641
>U39472-5|AAK31393.1| 128|Caenorhabditis elegans Hypothetical
protein B0304.4 protein.
Length = 128
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = -3
Query: 145 SFDNIDDGDLA-IWSRCILQPRLF 77
S N+ G L IWSRCI QP F
Sbjct: 14 SSGNVQKGKLLNIWSRCIAQPSSF 37
>Z81465-2|CAB03861.1| 1642|Caenorhabditis elegans Hypothetical
protein C09F9.2 protein.
Length = 1642
Score = 25.4 bits (53), Expect = 8.1
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = -1
Query: 210 NFAFTMTGCLGSLPLPSNL*YPALTILMTGTLPSGADAYFSLVCSETNV 64
N AF +T + LP N I MT ++YF C++ N+
Sbjct: 97 NDAFNVTETTKKVELPPNFECKDCAIRMTTQATEYGNSYFFYSCADINI 145
>Z81067-5|CAD92378.1| 965|Caenorhabditis elegans Hypothetical
protein F23A7.7 protein.
Length = 965
Score = 25.4 bits (53), Expect = 8.1
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -2
Query: 125 RGPCHLEQMHTSASSVQRLMSKAYLSSKLDR 33
RGP H E+ + + +QR+ S + L ++ R
Sbjct: 30 RGPAHFEEFNQPITGIQRITSTSNLVPEVVR 60
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,170,942
Number of Sequences: 27780
Number of extensions: 107196
Number of successful extensions: 256
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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