Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30860
         (309 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g23290.1 68414.m02913 60S ribosomal protein L27A (RPL27aB) si...    49   6e-07
At1g70600.1 68414.m08133 60S ribosomal protein L27A (RPL27aC) id...    49   7e-07
At1g12960.1 68414.m01505 60S ribosomal protein L27A (RPL27aA) si...    36   0.004
At2g47940.1 68415.m05995 DegP2 protease (DEGP2) identical to Deg...    27   2.6  
At2g44460.1 68415.m05528 glycosyl hydrolase family 1 protein con...    27   3.4  
At4g36080.1 68417.m05136 FAT domain-containing protein / phospha...    25   7.8  

>At1g23290.1 68414.m02913 60S ribosomal protein L27A (RPL27aB)
           similar to 60S RIBOSOMAL PROTEIN L27A GB:P49637
           GI:1710530 from [Arabidopsis thaliana]
          Length = 146

 Score = 49.2 bits (112), Expect = 6e-07
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
 Frame = +2

Query: 2   RNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXP 181
           R FH  +NK FCP++NLDKLW+LV E  + K  S+ D  VP+I++ +            P
Sbjct: 59  RYFHKLRNKFFCPIVNLDKLWSLVPEDVKAK--SSKD-NVPLIDVTQHGFFKVLGKGHLP 115

Query: 182 K-QPVIVXXXXXXXXXXXXXXDVGGVV 259
           + +P +V              + GG V
Sbjct: 116 ENKPFVVKAKLISKTAEKKIKEAGGAV 142


>At1g70600.1 68414.m08133 60S ribosomal protein L27A (RPL27aC)
           identical to 60S ribosomal protein L27A GB:P49637
           [Arabidopsis thaliana]
          Length = 146

 Score = 48.8 bits (111), Expect = 7e-07
 Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
 Frame = +2

Query: 2   RNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXP 181
           R FH  +NK FCP++NLDKLW+LV E  + K  S  D  VP+I++ +            P
Sbjct: 59  RYFHKLRNKFFCPIVNLDKLWSLVPEDVKAK--STKD-NVPLIDVTQHGFFKVLGKGHLP 115

Query: 182 K-QPVIVXXXXXXXXXXXXXXDVGGVV 259
           + +P +V              + GG V
Sbjct: 116 ENKPFVVKAKLISKTAEKKIKEAGGAV 142


>At1g12960.1 68414.m01505 60S ribosomal protein L27A (RPL27aA)
           similar to GB:BAA96068 from [Panax ginseng]
          Length = 104

 Score = 36.3 bits (80), Expect = 0.004
 Identities = 13/24 (54%), Positives = 19/24 (79%)
 Frame = +2

Query: 2   RNFHFRKNKNFCPVLNLDKLWTLV 73
           R FH  +NK +C ++NLDKLW++V
Sbjct: 40  RYFHKLRNKFYCQIVNLDKLWSMV 63


>At2g47940.1 68415.m05995 DegP2 protease (DEGP2) identical to DegP2
           protease GI:13172275 from [Arabidopsis thaliana];
           identical to cDNA  DegP2 protease (DEGP2) nuclear gene
           for chloroplast product GI:13172274
          Length = 607

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 261 YTTPPTSLIFFSADFEKNFAFTMTGCLGSL 172
           Y  P T +  F  D+E+N  +T   CLG L
Sbjct: 297 YVIPTTVVSHFLTDYERNGKYTGYPCLGVL 326


>At2g44460.1 68415.m05528 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to beta-glucosidase 1 (GI:12043529) [Arabidopsis
           thaliana]
          Length = 582

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -1

Query: 303 FFFLDIITYYLRR*YTT-PPTSLIFFSADFEKNFAF 199
           FF L +IT +L    T+ PP S +F    F  NF F
Sbjct: 5   FFILLVITSWLSEKITSLPPDSRVFDRHGFPDNFVF 40


>At4g36080.1 68417.m05136 FAT domain-containing protein /
            phosphatidylinositol 3- and 4-kinase family protein
            contains Pfam profiles PF00454: Phosphatidylinositol 3-
            and 4-kinase, PF02259: FAT domain, PF02260: FATC domain
          Length = 3839

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = +1

Query: 61   LDISL*TDEAEVCICSRWQGPRHQYCQSWILQVARQRQTPQ 183
            +D    T+  E+ + S W+ P   Y +  ++  A+  +TP+
Sbjct: 2786 VDFGKSTENYEILLDSLWKAPDWTYLKDHVIPKAQVEETPK 2826


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,752,146
Number of Sequences: 28952
Number of extensions: 97115
Number of successful extensions: 243
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 321405440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)