Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30859
(435 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein L36|Schizosacc... 48 8e-07
SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein L36|Sch... 47 1e-06
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo... 29 0.23
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ... 27 0.94
SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly sc... 25 5.0
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 5.0
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 25 5.0
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 25 6.7
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 25 6.7
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb... 25 6.7
>SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein
L36|Schizosaccharomyces pombe|chr 3|||Manual
Length = 99
Score = 47.6 bits (108), Expect = 8e-07
Identities = 22/45 (48%), Positives = 30/45 (66%)
Frame = +1
Query: 106 KGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 240
K +T + + RP+R KG +K + FVR +VREV G A YE+R ME
Sbjct: 13 KVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVME 57
Score = 37.5 bits (83), Expect = 9e-04
Identities = 19/34 (55%), Positives = 24/34 (70%)
Frame = +3
Query: 255 KDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 356
+DKRA K K+RLGT RAK K EEL++V+ R
Sbjct: 63 QDKRARKLAKKRLGTLKRAKGKIEELTSVIQSSR 96
>SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein
L36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 99
Score = 47.2 bits (107), Expect = 1e-06
Identities = 22/45 (48%), Positives = 30/45 (66%)
Frame = +1
Query: 106 KGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 240
K +T + + RP+R KG +K + FVR +VREV G A YE+R ME
Sbjct: 13 KTLTKRQLPERPSRRKGHLSKRTAFVRSIVREVAGFAPYERRVME 57
Score = 37.5 bits (83), Expect = 9e-04
Identities = 19/34 (55%), Positives = 24/34 (70%)
Frame = +3
Query: 255 KDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 356
+DKRA K K+RLGT RAK K EEL++V+ R
Sbjct: 63 QDKRARKLAKKRLGTLKRAKGKIEELTSVIQSSR 96
>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 29.5 bits (63), Expect = 0.23
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = -2
Query: 383 MVMSLGGCLPHLSEHVAKFFTLPLGADVCAQSSLQELQSTLVFDTLSNSIALF 225
+V SL G L + A+FFT PL ++VCA + + + ++ + N + +
Sbjct: 544 IVKSLNGEYIALEKIEAQFFTSPLVSNVCAYADVNHAKPVVIVNPDENGLRTY 596
>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 27.5 bits (58), Expect = 0.94
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +1
Query: 319 SVKNLATCSLR*GRQPPRLITITI 390
SVKNL SL+ PPRLIT+ +
Sbjct: 421 SVKNLKLLSLKYDVTPPRLITVCV 444
>SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly
scaffold protein Isu1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 192
Score = 25.0 bits (52), Expect = 5.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 136 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 240
RPA L+ L+T SKFV + V Y K ++
Sbjct: 27 RPANLQFLKTNSSKFVPQVTAN-VSRRMYHKNVLD 60
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 25.0 bits (52), Expect = 5.0
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -2
Query: 359 LPHLSEHVAKFFTLPLGADVCAQSSLQELQSTLVFDTLSNSIA 231
LP+ S + FF LP A +S ++ +L N+IA
Sbjct: 284 LPNASGSSSSFFGLPTAVSASAGTSFSDISPAAPKASLENNIA 326
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 25.0 bits (52), Expect = 5.0
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -2
Query: 251 TLSNSIALFSY*ACPTTSRTKSRTNLECF 165
T+++S LF+ A T+ TKS N+EC+
Sbjct: 850 TINHSRTLFATHAHQLTNLTKSFKNVECY 878
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 24.6 bits (51), Expect = 6.7
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 114 DTLAASGYFSCFVAFSQAYCDFKTRSHDFG 25
D A + S F AFSQ Y + +S+DFG
Sbjct: 319 DLRLACCFESHFFAFSQHYPRYLEQSNDFG 348
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 24.6 bits (51), Expect = 6.7
Identities = 9/24 (37%), Positives = 19/24 (79%)
Frame = +3
Query: 282 KRRLGTHIRAKRKREELSNVLAQM 353
K+RL +I K K+EE+++++A++
Sbjct: 89 KKRLDKYIENKLKKEEVASLIAKL 112
>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 990
Score = 24.6 bits (51), Expect = 6.7
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 192 STRSCRTRSI*EEGYGVT*GVKDKRALKFLKRRLGTHIRAKRKR 323
+TR+C T+S+ EEG+ + V ++ +FL L I+ K K+
Sbjct: 928 ATRACLTQSLEEEGF-PSRNVSNEIKRRFLTDLLKARIKDKVKQ 970
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,484,876
Number of Sequences: 5004
Number of extensions: 24386
Number of successful extensions: 66
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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