Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30859
(435 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR533465-1|CAG38496.1| 105|Homo sapiens RPL36 protein. 67 2e-11
BC091508-1|AAH91508.1| 105|Homo sapiens ribosomal protein L36 p... 67 2e-11
BC004971-1|AAH04971.1| 105|Homo sapiens ribosomal protein L36 p... 67 2e-11
BC003052-1|AAH03052.1| 105|Homo sapiens ribosomal protein L36 p... 67 2e-11
AB061833-1|BAB79471.1| 105|Homo sapiens ribosomal protein L36 p... 67 2e-11
AB046410-1|BAB21256.1| 32|Homo sapiens ribosomal protein L36 p... 57 3e-08
U93871-1|AAB68767.1| 400|Homo sapiens RaP2 interacting protein ... 29 5.2
CR456748-1|CAG33029.1| 405|Homo sapiens RPIP8 protein. 29 5.2
BX537443-1|CAD97685.1| 400|Homo sapiens hypothetical protein pr... 29 5.2
BC006194-1|AAH06194.1| 405|Homo sapiens RaP2 interacting protei... 29 5.2
AF055026-1|AAC09366.1| 405|Homo sapiens RaP2 interacting protei... 29 5.2
AB209802-1|BAD93039.1| 481|Homo sapiens RaP2 interacting protei... 29 5.2
>CR533465-1|CAG38496.1| 105|Homo sapiens RPL36 protein.
Length = 105
Score = 67.3 bits (157), Expect = 2e-11
Identities = 31/35 (88%), Positives = 34/35 (97%)
Frame = +3
Query: 255 KDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 359
KDKRALKF+K+R+GTHIRAKRKREELSNVLA MRK
Sbjct: 65 KDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99
Score = 64.1 bits (149), Expect = 2e-10
Identities = 35/69 (50%), Positives = 44/69 (63%)
Frame = +1
Query: 34 MAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGH 213
MA R+ +AVGL KGHK TK + R +R +G TKH+KFVRD++REV G
Sbjct: 1 MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50
Query: 214 AQYEKRAME 240
A YE+RAME
Sbjct: 51 APYERRAME 59
>BC091508-1|AAH91508.1| 105|Homo sapiens ribosomal protein L36
protein.
Length = 105
Score = 67.3 bits (157), Expect = 2e-11
Identities = 31/35 (88%), Positives = 34/35 (97%)
Frame = +3
Query: 255 KDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 359
KDKRALKF+K+R+GTHIRAKRKREELSNVLA MRK
Sbjct: 65 KDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99
Score = 64.1 bits (149), Expect = 2e-10
Identities = 35/69 (50%), Positives = 44/69 (63%)
Frame = +1
Query: 34 MAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGH 213
MA R+ +AVGL KGHK TK + R +R +G TKH+KFVRD++REV G
Sbjct: 1 MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50
Query: 214 AQYEKRAME 240
A YE+RAME
Sbjct: 51 APYERRAME 59
>BC004971-1|AAH04971.1| 105|Homo sapiens ribosomal protein L36
protein.
Length = 105
Score = 67.3 bits (157), Expect = 2e-11
Identities = 31/35 (88%), Positives = 34/35 (97%)
Frame = +3
Query: 255 KDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 359
KDKRALKF+K+R+GTHIRAKRKREELSNVLA MRK
Sbjct: 65 KDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99
Score = 64.1 bits (149), Expect = 2e-10
Identities = 35/69 (50%), Positives = 44/69 (63%)
Frame = +1
Query: 34 MAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGH 213
MA R+ +AVGL KGHK TK + R +R +G TKH+KFVRD++REV G
Sbjct: 1 MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50
Query: 214 AQYEKRAME 240
A YE+RAME
Sbjct: 51 APYERRAME 59
>BC003052-1|AAH03052.1| 105|Homo sapiens ribosomal protein L36
protein.
Length = 105
Score = 67.3 bits (157), Expect = 2e-11
Identities = 31/35 (88%), Positives = 34/35 (97%)
Frame = +3
Query: 255 KDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 359
KDKRALKF+K+R+GTHIRAKRKREELSNVLA MRK
Sbjct: 65 KDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99
Score = 64.1 bits (149), Expect = 2e-10
Identities = 35/69 (50%), Positives = 44/69 (63%)
Frame = +1
Query: 34 MAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGH 213
MA R+ +AVGL KGHK TK + R +R +G TKH+KFVRD++REV G
Sbjct: 1 MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50
Query: 214 AQYEKRAME 240
A YE+RAME
Sbjct: 51 APYERRAME 59
>AB061833-1|BAB79471.1| 105|Homo sapiens ribosomal protein L36
protein.
Length = 105
Score = 67.3 bits (157), Expect = 2e-11
Identities = 31/35 (88%), Positives = 34/35 (97%)
Frame = +3
Query: 255 KDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 359
KDKRALKF+K+R+GTHIRAKRKREELSNVLA MRK
Sbjct: 65 KDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99
Score = 64.1 bits (149), Expect = 2e-10
Identities = 35/69 (50%), Positives = 44/69 (63%)
Frame = +1
Query: 34 MAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGH 213
MA R+ +AVGL KGHK TK + R +R +G TKH+KFVRD++REV G
Sbjct: 1 MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50
Query: 214 AQYEKRAME 240
A YE+RAME
Sbjct: 51 APYERRAME 59
>AB046410-1|BAB21256.1| 32|Homo sapiens ribosomal protein L36
protein.
Length = 32
Score = 56.8 bits (131), Expect = 3e-08
Identities = 25/28 (89%), Positives = 28/28 (100%)
Frame = +3
Query: 255 KDKRALKFLKRRLGTHIRAKRKREELSN 338
KDKRALKF+K+R+GTHIRAKRKREELSN
Sbjct: 5 KDKRALKFIKKRVGTHIRAKRKREELSN 32
>U93871-1|AAB68767.1| 400|Homo sapiens RaP2 interacting protein 8
protein.
Length = 400
Score = 29.5 bits (63), Expect = 5.2
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +1
Query: 88 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 240
+I +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E
Sbjct: 254 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 303
>CR456748-1|CAG33029.1| 405|Homo sapiens RPIP8 protein.
Length = 405
Score = 29.5 bits (63), Expect = 5.2
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +1
Query: 88 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 240
+I +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E
Sbjct: 259 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 308
>BX537443-1|CAD97685.1| 400|Homo sapiens hypothetical protein
protein.
Length = 400
Score = 29.5 bits (63), Expect = 5.2
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +1
Query: 88 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 240
+I +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E
Sbjct: 254 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 303
>BC006194-1|AAH06194.1| 405|Homo sapiens RaP2 interacting protein 8
protein.
Length = 405
Score = 29.5 bits (63), Expect = 5.2
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +1
Query: 88 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 240
+I +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E
Sbjct: 259 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 308
>AF055026-1|AAC09366.1| 405|Homo sapiens RaP2 interacting protein 8
protein.
Length = 405
Score = 29.5 bits (63), Expect = 5.2
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +1
Query: 88 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 240
+I +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E
Sbjct: 259 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 308
>AB209802-1|BAD93039.1| 481|Homo sapiens RaP2 interacting protein 8
variant protein.
Length = 481
Score = 29.5 bits (63), Expect = 5.2
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +1
Query: 88 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 240
+I +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E
Sbjct: 294 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 343
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,877,662
Number of Sequences: 237096
Number of extensions: 850877
Number of successful extensions: 1772
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1767
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3487985734
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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