Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30859
         (435 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02450.1 68418.m00171 60S ribosomal protein L36 (RPL36C) 60S ...    56   1e-08
At3g53740.2 68416.m05937 60S ribosomal protein L36 (RPL36B) 60S ...    56   1e-08
At2g37600.1 68415.m04613 60S ribosomal protein L36 (RPL36A)            56   1e-08
At3g53740.1 68416.m05936 60S ribosomal protein L36 (RPL36B) 60S ...    46   1e-05
At1g34590.1 68414.m04299 hypothetical protein                          29   1.0  
At5g28430.1 68418.m03453 hypothetical protein                          27   5.5  
At4g06603.1 68417.m01028 expressed protein                             27   5.5  
At3g60930.1 68416.m06816 expressed protein                             27   5.5  
At4g29150.1 68417.m04171 calmodulin-binding family protein conta...    27   7.2  
At5g05440.1 68418.m00586 expressed protein low similarity to cyt...    26   9.5  

>At5g02450.1 68418.m00171 60S ribosomal protein L36 (RPL36C) 60S
           ribosomal protein L36, Arabidopsis thaliana,
           EMBL:AC004684
          Length = 108

 Score = 55.6 bits (128), Expect = 1e-08
 Identities = 26/34 (76%), Positives = 30/34 (88%)
 Frame = +3

Query: 255 KDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 356
           KDKRALK  KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 64  KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 97



 Score = 41.1 bits (92), Expect = 3e-04
 Identities = 25/61 (40%), Positives = 32/61 (52%)
 Frame = +1

Query: 58  VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 237
           VGL KGH  TK          +    RP   KG  +K + F+R+L++EV G A YEKR  
Sbjct: 8   VGLNKGHVVTK----------REQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 57

Query: 238 E 240
           E
Sbjct: 58  E 58


>At3g53740.2 68416.m05937 60S ribosomal protein L36 (RPL36B) 60S
           RIBOSOMAL PROTEIN L36 - Schizosaccharomyces pombe,
           swissprot:Q92365
          Length = 112

 Score = 55.6 bits (128), Expect = 1e-08
 Identities = 26/34 (76%), Positives = 30/34 (88%)
 Frame = +3

Query: 255 KDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 356
           KDKRALK  KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 68  KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 101



 Score = 42.3 bits (95), Expect = 1e-04
 Identities = 24/61 (39%), Positives = 33/61 (54%)
 Frame = +1

Query: 58  VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 237
           VGL KGH  T+          + +  RP   KG  +K + F+R+L++EV G A YEKR  
Sbjct: 12  VGLNKGHVVTR----------RELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 61

Query: 238 E 240
           E
Sbjct: 62  E 62


>At2g37600.1 68415.m04613 60S ribosomal protein L36 (RPL36A)
          Length = 113

 Score = 55.6 bits (128), Expect = 1e-08
 Identities = 26/34 (76%), Positives = 30/34 (88%)
 Frame = +3

Query: 255 KDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 356
           KDKRALK  KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 68  KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 101



 Score = 41.5 bits (93), Expect = 2e-04
 Identities = 25/61 (40%), Positives = 32/61 (52%)
 Frame = +1

Query: 58  VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 237
           VGL KGH  T+          + +  RP   KG  +K + F+R L+REV G A YEKR  
Sbjct: 12  VGLNKGHVVTR----------RELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRIT 61

Query: 238 E 240
           E
Sbjct: 62  E 62


>At3g53740.1 68416.m05936 60S ribosomal protein L36 (RPL36B) 60S
           RIBOSOMAL PROTEIN L36 - Schizosaccharomyces pombe,
           swissprot:Q92365
          Length = 103

 Score = 45.6 bits (103), Expect = 1e-05
 Identities = 21/29 (72%), Positives = 25/29 (86%)
 Frame = +3

Query: 270 LKFLKRRLGTHIRAKRKREELSNVLAQMR 356
           LK  KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 64  LKVAKRKLGTHKRAKRKREEMSSVLRKMR 92



 Score = 42.3 bits (95), Expect = 1e-04
 Identities = 24/61 (39%), Positives = 33/61 (54%)
 Frame = +1

Query: 58  VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 237
           VGL KGH  T+          + +  RP   KG  +K + F+R+L++EV G A YEKR  
Sbjct: 12  VGLNKGHVVTR----------RELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 61

Query: 238 E 240
           E
Sbjct: 62  E 62


>At1g34590.1 68414.m04299 hypothetical protein
          Length = 820

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +1

Query: 7   FLRICQSEIMAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPAR 147
           F+   + ++ AP  E A     GH++ +  A + G+TD+A  + PA+
Sbjct: 765 FIAELKDDLKAPALESAPLSPGGHRSVESVADKAGVTDQAGSLLPAK 811


>At5g28430.1 68418.m03453 hypothetical protein
          Length = 486

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +1

Query: 7   FLRICQSEIMAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPAR 147
           F+   + ++ AP  E A     GH++ +  A   GITD+A  + PA+
Sbjct: 431 FMAELKDDLKAPAPEPAPLSPGGHRSVESLADEAGITDQAGSLLPAK 477


>At4g06603.1 68417.m01028 expressed protein
          Length = 786

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +1

Query: 7   FLRICQSEIMAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPAR 147
           F+   + ++ AP  E A     GH++ +  A   GITD+A  + PA+
Sbjct: 731 FMAELKDDLKAPAPEPAPLSPGGHRSVESLADEAGITDQAGSLLPAK 777


>At3g60930.1 68416.m06816 expressed protein
          Length = 798

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +1

Query: 7   FLRICQSEIMAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPAR 147
           F+   + ++ AP  E A     GH++ +  A   GITD+A  + PA+
Sbjct: 743 FMSELKDDLKAPAPEPAPLSPGGHRSVESLADEAGITDQAGSLLPAK 789


>At4g29150.1 68417.m04171 calmodulin-binding family protein contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 383

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 245 LRCQRQACSEVLEATIGHTHPRQ 313
           +R QRQ+CS V EA +G+   R+
Sbjct: 358 VRMQRQSCSGVREAVVGNIERRR 380


>At5g05440.1 68418.m00586 expressed protein low similarity to
           cytokinin-specific binding protein [Vigna radiata]
           GI:4190976
          Length = 203

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 353 HLSEHVAKFFTLPLGADVCAQSSLQELQS 267
           H+ EHVA   T  +G D C  S +Q + +
Sbjct: 40  HVPEHVAMHHTHDVGPDQCCSSVVQMIHA 68


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,900,722
Number of Sequences: 28952
Number of extensions: 133711
Number of successful extensions: 358
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)