Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30858
         (406 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.08c |cox12||cytochrome c oxidase subunit VIb|Schizosacc...    84   9e-18
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    27   0.84 
SPBC119.09c |||ORMDL family protein|Schizosaccharomyces pombe|ch...    25   4.5  
SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces pomb...    25   5.9  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    24   7.8  

>SPCC1442.08c |cox12||cytochrome c oxidase subunit
           VIb|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 83

 Score = 83.8 bits (198), Expect = 9e-18
 Identities = 30/51 (58%), Positives = 39/51 (76%)
 Frame = +2

Query: 104 RFPNQNQTRHCYQSYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEWVDKW 256
           RFPN NQT+HC+QSY+D+ RC K +GE + PC  F   Y+SLCP EWV++W
Sbjct: 20  RFPNTNQTKHCFQSYIDYFRCIKAKGEDFVPCKQFWHAYQSLCPMEWVERW 70


>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 27.5 bits (58), Expect = 0.84
 Identities = 16/69 (23%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
 Frame = +2

Query: 65  KSPADLKTAPFDPRFPNQNQTRHCYQSYVDFHRCQKVRG-EKYEPCYYFKRVYRSLCPNE 241
           ++ ++ +++  DP  P +  + +C  +Y +    +K+RG +KY+P +    +Y     N+
Sbjct: 183 ETQSEKRSSQTDPSLPFKTNSLNCDVTYEEGPLTKKLRGPKKYKPSHSSWDIYGFKKANQ 242

Query: 242 W--VDKWTT 262
           +  VD++ T
Sbjct: 243 FYTVDQYNT 251


>SPBC119.09c |||ORMDL family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 186

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = -1

Query: 175 NFLATVEVHVTLVAVPRLILVREPWVERCCFEVGGRFDHLRHIAYYYLAVSWI 17
           N+     +H+ L+A  RLI    P V R   E+     +L ++A  ++   W+
Sbjct: 40  NYKGAWVIHIVLIAALRLIFHAIPSVSR---ELAWTLTNLTYMAGSFIMFHWV 89


>SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 455

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 224 SLCPNEWVDKWTTSAPKTFAG 286
           ++ PNEWV +W   +    AG
Sbjct: 390 AILPNEWVTEWVEQSISVAAG 410


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 17/67 (25%), Positives = 25/67 (37%)
 Frame = +3

Query: 63  SNRPPTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMS 242
           S  PP S    S   + T    GT+     TS++      K +    +    +  S P S
Sbjct: 252 SIEPPASSASTSPRNTPTPSNNGTSINANVTSSLTSNSTGKTSKTTDLLIAASKKSLP-S 310

Query: 243 GSTSGQP 263
            ST  +P
Sbjct: 311 NSTPSKP 317


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,616,178
Number of Sequences: 5004
Number of extensions: 32794
Number of successful extensions: 90
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)