Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30858
(406 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0210 + 15470680-15470715,15473088-15473342,15473417-154734... 85 2e-17
07_03_1305 - 25638531-25638584,25638909-25638990,25639087-256391... 85 2e-17
04_04_0390 - 24882572-24882577,24882928-24883009,24883089-248832... 79 2e-15
02_05_1031 - 33626527-33626580,33627482-33627563,33628892-33628911 46 2e-05
04_04_1615 + 34793511-34793660,34794013-34794070,34794163-347944... 29 1.1
03_05_0451 - 24456923-24457069,24457161-24457310,24457408-244575... 29 1.1
12_02_1088 - 25954506-25954652,25954769-25954918,25955011-259551... 29 1.4
02_04_0440 + 22954950-22955213,22955317-22956621,22956791-22957522 29 1.4
04_04_0692 - 27307349-27307728,27308381-27308546 29 1.8
04_02_0017 - 8572400-8572732,8572818-8572919,8573138-8573230,857... 29 1.8
01_06_0644 + 30821811-30821855,30822707-30822976,30823079-308243... 29 1.8
01_05_0195 - 19111983-19112477,19112646-19113950,19114053-191143... 28 2.4
07_03_1090 + 23891294-23892222,23892317-23892516,23895241-238954... 27 4.3
06_01_0772 + 5770502-5770619,5771035-5772335 27 4.3
11_04_0241 + 15262237-15262861,15264392-15264549,15266236-15266445 27 7.5
09_04_0320 - 16656620-16657243,16658198-16659106 27 7.5
07_01_0847 + 6884862-6884902,6884943-6885546 27 7.5
06_01_1173 + 10014391-10014678,10015478-10017245,10017333-100174... 27 7.5
04_04_0699 - 27345243-27346199 27 7.5
02_01_0560 - 4117565-4118176,4118443-4118477,4118836-4118962 27 7.5
03_06_0244 + 32613914-32614666 26 9.9
01_01_0757 - 5840736-5842574 26 9.9
01_01_0703 - 5425713-5425862,5426302-5426451,5426853-5426964,542... 26 9.9
>03_03_0210 +
15470680-15470715,15473088-15473342,15473417-15473499,
15473617-15473698,15474886-15474939
Length = 169
Score = 85.4 bits (202), Expect = 2e-17
Identities = 36/75 (48%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Frame = +2
Query: 65 KSPADLKTAPFDPRFPNQNQTRHCYQSYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEW 244
K ++TAP D RFP NQTRHC+ YV++HRC +GE C F + YRSLCP EW
Sbjct: 93 KPEIKIETAPADFRFPTTNQTRHCFTRYVEYHRCVAAKGEDAPECDKFAKYYRSLCPGEW 152
Query: 245 VDKWTTSAPK-TFAG 286
V++W TF G
Sbjct: 153 VERWNEQRENGTFPG 167
>07_03_1305 -
25638531-25638584,25638909-25638990,25639087-25639169,
25639252-25639515,25639984-25640060,25640183-25640277,
25640953-25641065
Length = 255
Score = 85.0 bits (201), Expect = 2e-17
Identities = 34/75 (45%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Frame = +2
Query: 65 KSPADLKTAPFDPRFPNQNQTRHCYQSYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEW 244
K ++TAP D RFP NQTRHC+ Y+++HRC +GE C F + YRSLCP+EW
Sbjct: 179 KPEIKIETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECEKFAKYYRSLCPSEW 238
Query: 245 VDKWTTSAPK-TFAG 286
+++W TF G
Sbjct: 239 IERWNEQRENGTFPG 253
>04_04_0390 -
24882572-24882577,24882928-24883009,24883089-24883200,
24883411-24883441
Length = 76
Score = 78.6 bits (185), Expect = 2e-15
Identities = 30/56 (53%), Positives = 38/56 (67%)
Frame = +2
Query: 77 DLKTAPFDPRFPNQNQTRHCYQSYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEW 244
++KTAP D RFP NQTRHC+ Y+++HRC +GE C F + YRSLCP EW
Sbjct: 20 EIKTAPADFRFPTTNQTRHCFTRYIEYHRCVNAKGEATADCEKFAKYYRSLCPAEW 75
>02_05_1031 - 33626527-33626580,33627482-33627563,33628892-33628911
Length = 51
Score = 45.6 bits (103), Expect = 2e-05
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +2
Query: 164 CQKVRGEKYEPCYYFKRVYRSLCPNEWVDKWTTS-APKTFAG 286
C + +GE + C + + YRSLCP EW+++W A TFAG
Sbjct: 8 CIEAKGEGSDECTKYAKCYRSLCPGEWIERWKEQRANGTFAG 49
>04_04_1615 +
34793511-34793660,34794013-34794070,34794163-34794410,
34794485-34794601,34795309-34795369,34795860-34795954,
34796048-34796122,34796316-34796401,34796529-34796578,
34796667-34796707,34796784-34796948,34797204-34797271,
34797362-34797422,34797878-34798393
Length = 596
Score = 29.5 bits (63), Expect = 1.1
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +3
Query: 177 AAKNTSHATISRECTGLSAPMSGSTSGQPARRRPSPVGFRS*T 305
+ + +SH + R+ + LSAP S S G R S GF S T
Sbjct: 531 STQGSSHPMLQRQASSLSAPSSPSPRGGGMTRSMSMPGFASLT 573
>03_05_0451 -
24456923-24457069,24457161-24457310,24457408-24457513,
24457715-24458040,24458129-24458263,24458350-24458430,
24458516-24458704,24458794-24458986,24459068-24459174,
24459280-24459354,24459446-24459601,24459745-24459828,
24459933-24460046,24460119-24460214,24460302-24460392,
24460500-24460615,24460878-24461037,24461964-24462217
Length = 859
Score = 29.5 bits (63), Expect = 1.1
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = +3
Query: 120 IRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGQPAR 269
+ + T T V W V K + +S C+G++A G S +P +
Sbjct: 190 LSKATGTAVDWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPTK 239
>12_02_1088 -
25954506-25954652,25954769-25954918,25955011-25955116,
25955247-25955569,25955656-25955790,25956310-25956444,
25956445-25956525,25956619-25956807,25956935-25957127,
25957244-25957350,25957457-25957531,25957619-25957774,
25957968-25958051,25958152-25958265,25958345-25958440,
25958543-25958633,25958721-25958836,25958934-25959093,
25960390-25960634
Length = 900
Score = 29.1 bits (62), Expect = 1.4
Identities = 13/48 (27%), Positives = 21/48 (43%)
Frame = +3
Query: 126 RGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGQPAR 269
+ T T V W V K + +S C+G++A G S +P +
Sbjct: 189 KATGTAVEWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPTK 236
>02_04_0440 + 22954950-22955213,22955317-22956621,22956791-22957522
Length = 766
Score = 29.1 bits (62), Expect = 1.4
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +2
Query: 104 RFPNQNQTRHCYQSYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEWVDKWTTSAP 271
R ++N TR C + Y D Q+ K+EP + + L + D W T AP
Sbjct: 341 RTQSENATR-CLKQYRDELNLQRADQVKWEPYLHIESASLPLLCTKNADLWLTQAP 395
>04_04_0692 - 27307349-27307728,27308381-27308546
Length = 181
Score = 28.7 bits (61), Expect = 1.8
Identities = 20/62 (32%), Positives = 27/62 (43%)
Frame = +3
Query: 96 STHGSLTKIRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGQPARRR 275
S L + GT T VT T + R F +T H + T A +SGS +G +
Sbjct: 78 SAANPLRSYKDGT-TIVTLTRSGTRYFICGSTGHCGAGMKLTVTVATLSGSAAGGTRLAK 136
Query: 276 PS 281
PS
Sbjct: 137 PS 138
>04_02_0017 -
8572400-8572732,8572818-8572919,8573138-8573230,
8573391-8573519,8573781-8574025,8574184-8574453,
8574590-8574752,8575965-8576063
Length = 477
Score = 28.7 bits (61), Expect = 1.8
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -3
Query: 347 DLIKTNRNKLKHRERLGSKSYR 282
+L KTNR+K+K+ GS+SY+
Sbjct: 306 ELNKTNRSKVKYHHTTGSRSYK 327
>01_06_0644 +
30821811-30821855,30822707-30822976,30823079-30824383,
30824551-30824692,30824752-30825275
Length = 761
Score = 28.7 bits (61), Expect = 1.8
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Frame = +2
Query: 71 PADLKTAPF---DPRFPNQNQTRHCYQSYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNE 241
P DL F R ++N TR C + Y D Q+ K+EP + + L +
Sbjct: 344 PQDLPPVGFRWVGARTQSENATR-CLKQYRDELNLQRADQVKWEPYLHIESSSLPLLCTK 402
Query: 242 WVDKWTTSAP 271
D W T AP
Sbjct: 403 DADLWLTQAP 412
>01_05_0195 - 19111983-19112477,19112646-19113950,19114053-19114322,
19118884-19118950,19119229-19119284,19119530-19119590,
19120181-19120297,19120570-19120682,19120774-19120848,
19121464-19122045,19122056-19122271,19122372-19122497,
19126152-19126190,19126266-19126360,19126423-19126962,
19127102-19127327,19127385-19127437,19127534-19127701,
19128353-19128707,19128785-19128876,19129891-19129993
Length = 1717
Score = 28.3 bits (60), Expect = 2.4
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +2
Query: 104 RFPNQNQTRHCYQSYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEWVDKWTTSAP 271
R ++N TR C + Y D Q+ K+EP + + L + D W T AP
Sbjct: 1371 RTQSENATR-CLKQYRDELNLQRADQVKWEPYLHIESSSLPLLCTKDADLWLTQAP 1425
>07_03_1090 +
23891294-23892222,23892317-23892516,23895241-23895482,
23895771-23896461,23896486-23896562
Length = 712
Score = 27.5 bits (58), Expect = 4.3
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Frame = +3
Query: 72 PPTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTSHATISREC-TGLSAPMSGS 248
PP S L+T G T AT T T F+ + H+T+ + ++AP
Sbjct: 157 PPPSTPPLTTTGYSTD-EEDQATYYTAPKTAMSSFSRSTSQHSTLEQTAMPPMAAPAPPQ 215
Query: 249 TS-GQPARRRPSP 284
T+ +P R P P
Sbjct: 216 TNPPRPVRPPPPP 228
>06_01_0772 + 5770502-5770619,5771035-5772335
Length = 472
Score = 27.5 bits (58), Expect = 4.3
Identities = 18/72 (25%), Positives = 34/72 (47%)
Frame = +2
Query: 5 SIEINPRNG*IIISNMPEMIKSPADLKTAPFDPRFPNQNQTRHCYQSYVDFHRCQKVRGE 184
++E+ NG ++++ EMI +T+ + F ++T S + +HR + R E
Sbjct: 316 TMEMLIANGQRLVTSSSEMIVDSGAQRTSLWPSTFALLDKTITQAMSSIGYHRTSRARQE 375
Query: 185 KYEPCYYFKRVY 220
Y CY + Y
Sbjct: 376 SY-ICYLSEHDY 386
>11_04_0241 + 15262237-15262861,15264392-15264549,15266236-15266445
Length = 330
Score = 26.6 bits (56), Expect = 7.5
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = +2
Query: 140 QSYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEWVDKWTTSAP 271
Q +V R +V EKY ++ RV + L +W T P
Sbjct: 250 QEWVPMDRLHEVMFEKYGDLWHHNRVRKYLTSEDWPKSETDGRP 293
>09_04_0320 - 16656620-16657243,16658198-16659106
Length = 510
Score = 26.6 bits (56), Expect = 7.5
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 102 HGSLTKIRRGTATKVTWTSTVARKFAAKNTSHATISR 212
HG + ++ GTAT V +S A + A + H +R
Sbjct: 68 HGPVMSLKLGTATAVVASSAAAARDALQRYDHVLAAR 104
>07_01_0847 + 6884862-6884902,6884943-6885546
Length = 214
Score = 26.6 bits (56), Expect = 7.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 305 RLGSKSYRRRSSARWLSTCRPTHWGR 228
RLG + RR S+ARW +T + GR
Sbjct: 7 RLGGRRRRRGSAARWFATGGRSRGGR 32
>06_01_1173 +
10014391-10014678,10015478-10017245,10017333-10017436,
10017632-10017706,10017887-10017918,10019396-10019482,
10020848-10021294,10021477-10021630,10022203-10022329,
10022547-10022632,10022719-10022790,10023083-10023286,
10023732-10024049
Length = 1253
Score = 26.6 bits (56), Expect = 7.5
Identities = 11/35 (31%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Frame = -3
Query: 347 DLIKTNR-NKLKHRERLGSKSYRRRSSARWLSTCR 246
D +K +R ++L+ + +LGS+++ + S R +S+C+
Sbjct: 628 DKVKGSRPDRLERKRKLGSETHDDKGSKRSMSSCK 662
>04_04_0699 - 27345243-27346199
Length = 318
Score = 26.6 bits (56), Expect = 7.5
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +3
Query: 180 AKNTSHATISRECTGLSAPMSGSTSGQPARRRPSPVGFRS*TFPML 317
A + S + S CT + S S+SG P RR+ S + P++
Sbjct: 239 ATSESSFSSSSSCTTTTTSSSTSSSGSPKRRKRGEAAAASMSMPLV 284
>02_01_0560 - 4117565-4118176,4118443-4118477,4118836-4118962
Length = 257
Score = 26.6 bits (56), Expect = 7.5
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -3
Query: 263 WLSTCRPTHWGRET 222
W++TCRPT GR T
Sbjct: 8 WIATCRPTAGGRAT 21
>03_06_0244 + 32613914-32614666
Length = 250
Score = 26.2 bits (55), Expect = 9.9
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -1
Query: 283 GEGLRRAGCPLVDPLIGAER 224
G G+RRA C + P+ GAER
Sbjct: 94 GGGVRRAACAGLGPIRGAER 113
>01_01_0757 - 5840736-5842574
Length = 612
Score = 26.2 bits (55), Expect = 9.9
Identities = 23/54 (42%), Positives = 27/54 (50%)
Frame = +3
Query: 132 TATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGQPARRRPSPVGF 293
TAT + S A + AA NTSH T SR GLS T+ A RR S G+
Sbjct: 361 TATTGSLVSYDAPRLAAVNTSHTTASR-FDGLSERYYYHTT---ASRRISAAGW 410
>01_01_0703 -
5425713-5425862,5426302-5426451,5426853-5426964,
5427120-5427481,5427578-5427712,5427812-5427889,
5427989-5428174,5428266-5428452,5428552-5428658,
5428732-5428806,5428885-5429040,5429165-5429437,
5429548-5429643,5429724-5429814,5429883-5430385
Length = 886
Score = 26.2 bits (55), Expect = 9.9
Identities = 13/50 (26%), Positives = 20/50 (40%)
Frame = +3
Query: 120 IRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGQPAR 269
+ + T T V W K + IS C G++A G +PA+
Sbjct: 181 LSKATGTAVEWLQMPGMKPGPDSIGIIAISHGCAGVAARACGLVGMEPAK 230
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,725,121
Number of Sequences: 37544
Number of extensions: 222120
Number of successful extensions: 698
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -