Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30858
(406 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22540| Best HMM Match : Glyco_transf_54 (HMM E-Value=0) 29 1.4
SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 3.3
SB_18714| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.4
SB_38785| Best HMM Match : adh_short (HMM E-Value=2.4e-06) 27 4.4
SB_20553| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.4
SB_13421| Best HMM Match : Harpin (HMM E-Value=0.62) 27 4.4
SB_38717| Best HMM Match : Cornifin (HMM E-Value=7.2) 27 5.8
SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0) 27 5.8
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 27 7.7
SB_41598| Best HMM Match : HLH (HMM E-Value=2.2) 27 7.7
SB_37646| Best HMM Match : Cob_adeno_trans (HMM E-Value=6.9) 27 7.7
SB_27882| Best HMM Match : Cob_adeno_trans (HMM E-Value=3.6) 27 7.7
>SB_22540| Best HMM Match : Glyco_transf_54 (HMM E-Value=0)
Length = 352
Score = 29.1 bits (62), Expect = 1.4
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 189 TSHATISRECTGLSAPMSGSTSGQPARRRPSPV 287
TSH + ++ SA S TSG P +PSP+
Sbjct: 17 TSHVSTDKDAKATSANSSNMTSGLPVVFKPSPL 49
>SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 4303
Score = 27.9 bits (59), Expect = 3.3
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 71 PADLKTAPFDPRFPNQNQTRHCYQSYVDFHRCQK 172
P +TAP P+ P + + C SYV F +K
Sbjct: 3290 PEIQRTAPVSPQTPIEYKCNKCRNSYVSFSEMKK 3323
Score = 27.9 bits (59), Expect = 3.3
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 68 SPADLKTAPFDPRFPNQNQTRHCYQSYVDFHRCQK 172
+P +TAP P+ P + + C SYV F +K
Sbjct: 3499 TPEMQETAPVSPQTPIEYKCNKCRNSYVSFSEMKK 3533
Score = 27.9 bits (59), Expect = 3.3
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 71 PADLKTAPFDPRFPNQNQTRHCYQSYVDFHRCQK 172
P +TAP P+ P + + C SYV F +K
Sbjct: 3710 PEIQRTAPVSPQTPIEYKCNKCSNSYVSFSEMKK 3743
Score = 27.9 bits (59), Expect = 3.3
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 68 SPADLKTAPFDPRFPNQNQTRHCYQSYVDFHRCQK 172
+P +TAP P+ P + + C SYV F +K
Sbjct: 3919 TPEMQETAPVSPQTPIEYKCNKCSNSYVSFSEMKK 3953
>SB_18714| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 124
Score = 27.5 bits (58), Expect = 4.4
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Frame = -3
Query: 299 GSKSYRRRS---SARWLSTCRPTHWGRETCTL 213
G +Y RR WLST THW R+ T+
Sbjct: 39 GVTTYNRREYEDCIEWLSTLAYTHWRRDASTI 70
>SB_38785| Best HMM Match : adh_short (HMM E-Value=2.4e-06)
Length = 267
Score = 27.5 bits (58), Expect = 4.4
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +2
Query: 38 IISNMPEMIKSPADLKTAPFDPRFPNQNQTRHCYQSYVD 154
++ ++PE ++ A KT PF PR + ++ H QS ++
Sbjct: 211 LLESLPEKVRI-ALAKTVPFPPRLGHPDEYAHLVQSVME 248
>SB_20553| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 445
Score = 27.5 bits (58), Expect = 4.4
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = -3
Query: 323 KLKHRERLGSKSYRRRSSARWLSTCR 246
+L RL SYRRRSS RW S C+
Sbjct: 84 ELTWERRLALLSYRRRSS-RWSSKCK 108
>SB_13421| Best HMM Match : Harpin (HMM E-Value=0.62)
Length = 375
Score = 27.5 bits (58), Expect = 4.4
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = +3
Query: 105 GSLTKIRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGQPARRRPSP 284
GS++K+ G+ ++V+W S AA SH S + G ++ S + + SP
Sbjct: 301 GSISKVSCGSISQVSWGSIPKSHGAASLKSHGAASLKSHGAASLKSHVAASLKSHGAASP 360
>SB_38717| Best HMM Match : Cornifin (HMM E-Value=7.2)
Length = 318
Score = 27.1 bits (57), Expect = 5.8
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 201 TISRECTGLSAPMSGSTSGQPARRRP 278
TI+ + +G+ +P++ STS +R RP
Sbjct: 27 TIAPDSSGIFSPLASSTSASDSRHRP 52
>SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0)
Length = 751
Score = 27.1 bits (57), Expect = 5.8
Identities = 22/72 (30%), Positives = 31/72 (43%)
Frame = +3
Query: 48 ICLR*SNRPPTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTSHATISRECTGL 227
IC PPT +T T + T T TST A+ T AT S E +
Sbjct: 174 ICTDTDIPPPTLPPPPTTTPPPTTTQATTTNPPTTTST-----ASSTTVRATTSGEVSST 228
Query: 228 SAPMSGSTSGQP 263
S+P + +++G P
Sbjct: 229 SSPGADTSTGHP 240
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 26.6 bits (56), Expect = 7.7
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 224 SLCPNEWVDKWTTSAPKTFAGRI*ILNVPDALIY-FDLF*LGR 349
SL ++W K APKT G I +L +++Y D+F GR
Sbjct: 1719 SLFWSDWTRKQIVYAPKTGTGPIRVLRANLSVVYAVDIFSKGR 1761
>SB_41598| Best HMM Match : HLH (HMM E-Value=2.2)
Length = 519
Score = 26.6 bits (56), Expect = 7.7
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +3
Query: 168 RKFAAKNTSHATISRE--CTGLSAPMSGSTSGQPARRRPSPVGF 293
RKF ++NTS AT +++ C S S G+ R+R + F
Sbjct: 7 RKFFSENTSRATFTKDFGCQVNICSASASLEGEIQRQRNTDTNF 50
>SB_37646| Best HMM Match : Cob_adeno_trans (HMM E-Value=6.9)
Length = 497
Score = 26.6 bits (56), Expect = 7.7
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 185 KYEPCYYFKRVYRSLCPNEWVDKWTTSAPKTFAGRI 292
KYE + +R RSLC E + T++A KT ++
Sbjct: 356 KYERDFEAERELRSLCQGEAAPRATSAATKTREAKV 391
>SB_27882| Best HMM Match : Cob_adeno_trans (HMM E-Value=3.6)
Length = 822
Score = 26.6 bits (56), Expect = 7.7
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 185 KYEPCYYFKRVYRSLCPNEWVDKWTTSAPKTFAGRI 292
KYE + +R RSLC E + T++A KT ++
Sbjct: 321 KYERDFEAERELRSLCQGEAAPRATSAATKTREAKV 356
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,139,957
Number of Sequences: 59808
Number of extensions: 241758
Number of successful extensions: 976
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 727815563
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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