Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30858
         (406 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024859-18|AAK29974.1|  121|Caenorhabditis elegans Hypothetical...    79   9e-16
Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical pr...    36   0.008
X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase...    36   0.008
D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosi...    36   0.008
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr...    29   1.3  
AF039037-5|AAC48228.3|  714|Caenorhabditis elegans Temporarily a...    29   1.3  
Z80344-2|CAB02487.3|  608|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z74473-5|CAI79195.1|  245|Caenorhabditis elegans Hypothetical pr...    27   3.9  
AF077534-3|AAC26290.1|  389|Caenorhabditis elegans Hypothetical ...    27   3.9  
AC087079-11|AAK27869.1|  370|Caenorhabditis elegans Hypothetical...    27   5.1  
Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical p...    27   6.8  
Z79759-1|CAB02138.2|  841|Caenorhabditis elegans Hypothetical pr...    27   6.8  
U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical pr...    27   6.8  
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr...    27   6.8  
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    27   6.8  

>AC024859-18|AAK29974.1|  121|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.5 protein.
          Length = 121

 Score = 79.4 bits (187), Expect = 9e-16
 Identities = 27/59 (45%), Positives = 39/59 (66%)
 Frame = +2

Query: 80  LKTAPFDPRFPNQNQTRHCYQSYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEWVDKW 256
           L  AP+D RFP   + R C+  YVDFHRC ++ G+ Y+PC +F+ VY+  CP  W ++W
Sbjct: 48  LWAAPYDARFPQVRKQRQCFAYYVDFHRCNELMGQDYKPCKFFQNVYKDFCPGFWTERW 106


>Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical
           protein ZK1067.1 protein.
          Length = 1323

 Score = 36.3 bits (80), Expect = 0.008
 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
 Frame = +2

Query: 23  RNG*IIISNMPEM--IKSPADLKTAPFDP---RFPNQNQTRHCYQSYVDFHRCQKVRGEK 187
           RNG + I + P+M  I    D K   +DP   +    N  +HCYQ+     +C +   +K
Sbjct: 168 RNGSVTIQDNPKMCYIGDKIDWKELLYDPDVQKVETTNSHQHCYQNGKSMAKCHESCNDK 227

Query: 188 Y--EPCYYFKRVYRSLCP 235
                    +RVYRS+CP
Sbjct: 228 CWGSGDNDCQRVYRSVCP 245


>X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase
           protein.
          Length = 1323

 Score = 36.3 bits (80), Expect = 0.008
 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
 Frame = +2

Query: 23  RNG*IIISNMPEM--IKSPADLKTAPFDP---RFPNQNQTRHCYQSYVDFHRCQKVRGEK 187
           RNG + I + P+M  I    D K   +DP   +    N  +HCYQ+     +C +   +K
Sbjct: 168 RNGSVTIQDNPKMCYIGDKIDWKELLYDPDVQKVETTNSHQHCYQNGKSMAKCHESCNDK 227

Query: 188 Y--EPCYYFKRVYRSLCP 235
                    +RVYRS+CP
Sbjct: 228 CWGSGDNDCQRVYRSVCP 245


>D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosine
           kinase protein.
          Length = 1374

 Score = 36.3 bits (80), Expect = 0.008
 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
 Frame = +2

Query: 23  RNG*IIISNMPEM--IKSPADLKTAPFDP---RFPNQNQTRHCYQSYVDFHRCQKVRGEK 187
           RNG + I + P+M  I    D K   +DP   +    N  +HCYQ+     +C +   +K
Sbjct: 219 RNGSVTIQDNPKMCYIGDKIDWKELLYDPDVQKVETTNSHQHCYQNGKSMAKCHESCNDK 278

Query: 188 Y--EPCYYFKRVYRSLCP 235
                    +RVYRS+CP
Sbjct: 279 CWGSGDNDCQRVYRSVCP 296


>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical protein
            F47A4.2 protein.
          Length = 3498

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
 Frame = +3

Query: 63   SNRPPTSKQHLSTHGSLTKIRRGTA--TKVTWTSTVARKFAAKNTSHATISRECTGLSAP 236
            SN       H +  G+   +  G++  TKV   + + RK   K  S A  S      ++ 
Sbjct: 2363 SNPAAGGNFHAAMRGNQPPMSNGSSDETKVHIRNLLNRKKEEKRNSLADASAAAAAANSN 2422

Query: 237  MSGSTSGQPARRRPSPVG 290
              G+TS  P    P P+G
Sbjct: 2423 AMGNTSSMPPSGPPMPMG 2440


>AF039037-5|AAC48228.3|  714|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 40 protein.
          Length = 714

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
 Frame = +2

Query: 71  PADLKTAPFDPRFPNQNQTRH-CYQSYVDFHRCQ-KVRGEKYEPCYYFKRVYRSLCPNEW 244
           P D    P DPR+ N+N+ R+  +  Y    RCQ  + G       YF R    +  N W
Sbjct: 483 PTDYPLGPKDPRY-NENERRYDVWNYYNPLIRCQIYIMGLVLG---YFMRKVPKININPW 538

Query: 245 VDK--WTTS 265
           VD+  W  S
Sbjct: 539 VDRIMWVLS 547


>Z80344-2|CAB02487.3|  608|Caenorhabditis elegans Hypothetical
           protein F15D4.4 protein.
          Length = 608

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 20/72 (27%), Positives = 29/72 (40%)
 Frame = +3

Query: 96  STHGSLTKIRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGQPARRR 275
           +T  S T     T T  T TST     +   ++ +T +   T  SAP+    +  P  RR
Sbjct: 520 TTTSSTTSTEASTPTTSTSTSTSTSTPSTTTSTTSTSTTSSTSSSAPIRAVRTSTPTTRR 579

Query: 276 PSPVGFRS*TFP 311
            +    R  T P
Sbjct: 580 TTTTTPRRTTTP 591


>Z74473-5|CAI79195.1|  245|Caenorhabditis elegans Hypothetical
           protein F56H9.6 protein.
          Length = 245

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 3/92 (3%)
 Frame = +3

Query: 75  PTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFA---AKNTSHATISRECTGLSAPMSG 245
           PT+    ST  + T     T T  T TST +          TS  T +   T  + P + 
Sbjct: 65  PTTTSTTSTTTTTTPTTTTTTTPTTTTSTTSTTTTTTPTTTTSTTTTTTTTTTTATPTTT 124

Query: 246 STSGQPARRRPSPVGFRS*TFPML*FISICFN 341
           +T+  P       +G      P + FI + +N
Sbjct: 125 TTTMPPCNPNAVSLGMGDANNPQI-FIDVTYN 155


>AF077534-3|AAC26290.1|  389|Caenorhabditis elegans Hypothetical
           protein K07D4.6 protein.
          Length = 389

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = +3

Query: 75  PTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTS 254
           P + +  ST    T     T    T TST  +      TS +TIS   T  + P + +T+
Sbjct: 256 PGTTEETSTEPETTTTSTTTTEPTTTTSTTTQTTTTVPTSTSTISTTSTTTTTPTTTTTT 315


>AC087079-11|AAK27869.1|  370|Caenorhabditis elegans Hypothetical
           protein Y37E3.11 protein.
          Length = 370

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
 Frame = +2

Query: 107 FPNQNQTRHCYQS----YVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEWVDKWTTSAP 271
           F + NQ R   Q      V  H  +++R  K  P +  +  YR +   +WVD+   +AP
Sbjct: 26  FGHANQLRQAKQFGQKLIVGVHNDEEIRLHKGPPVFNEQERYRMVAGIKWVDEVVENAP 84


>Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical
           protein C53A5.13 protein.
          Length = 681

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
 Frame = +3

Query: 96  STHGSLTKIRRGTATKVT--WTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGQPAR 269
           S   ++ K+R  T   +T  W +    K  +K T  A      TG+S  +  S  G+P +
Sbjct: 228 SDEANILKLRSRTPNSLTVYWPANWLTKTTSKFTIKAKTIHSPTGVSKEIENSAIGEPGK 287


>Z79759-1|CAB02138.2|  841|Caenorhabditis elegans Hypothetical
           protein ZK858.1 protein.
          Length = 841

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +3

Query: 159 TVARKFAAKNTSHATISRECTGLSAPMSGSTSGQPARRRPS 281
           T   KF     S+   SR   G +AP     +  P R+RPS
Sbjct: 602 TFIEKFHFNGYSYPPPSRYAAGTAAPSHKHRNAHPQRQRPS 642


>U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical
           protein K06A9.1c protein.
          Length = 825

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
 Frame = +3

Query: 63  SNRPPTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTSHATI--SRECTGLSAP 236
           S+ P  S    ST  ++T    G+++ +  T + +    +  TS +T+  S    G S+ 
Sbjct: 325 SSSPNPSSSPASTGSTITI--SGSSSIIVSTVSGSTVSGSTGTSQSTLASSTATPGSSST 382

Query: 237 MSGSTSGQPARRRPSP 284
           +  S+S QP+ + P+P
Sbjct: 383 VPSSSSPQPSSQSPAP 398


>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
           protein K06A9.1a protein.
          Length = 1032

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
 Frame = +3

Query: 63  SNRPPTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTSHATI--SRECTGLSAP 236
           S+ P  S    ST  ++T    G+++ +  T + +    +  TS +T+  S    G S+ 
Sbjct: 532 SSSPNPSSSPASTGSTITI--SGSSSIIVSTVSGSTVSGSTGTSQSTLASSTATPGSSST 589

Query: 237 MSGSTSGQPARRRPSP 284
           +  S+S QP+ + P+P
Sbjct: 590 VPSSSSPQPSSQSPAP 605


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
           protein K06A9.1b protein.
          Length = 2232

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
 Frame = +3

Query: 63  SNRPPTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTSHATI--SRECTGLSAP 236
           S+ P  S    ST  ++T    G+++ +  T + +    +  TS +T+  S    G S+ 
Sbjct: 532 SSSPNPSSSPASTGSTITI--SGSSSIIVSTVSGSTVSGSTGTSQSTLASSTATPGSSST 589

Query: 237 MSGSTSGQPARRRPSP 284
           +  S+S QP+ + P+P
Sbjct: 590 VPSSSSPQPSSQSPAP 605


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,034,801
Number of Sequences: 27780
Number of extensions: 184991
Number of successful extensions: 622
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)