Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30858
         (406 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.    23   1.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   2.3  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   3.0  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   7.0  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   7.0  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   7.0  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    20   9.3  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    20   9.3  

>AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS
          protein.
          Length = 80

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 41 ISNMPEMIKSPADLKTAPF 97
          +S MP+ +K P D   AP+
Sbjct: 9  VSTMPKSLKEPCDGCAAPY 27


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 14/52 (26%), Positives = 19/52 (36%)
 Frame = +3

Query: 129  GTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGQPARRRPSP 284
            G    V +   +A+  + K     T+S    G   P     S QP    PSP
Sbjct: 940  GKTVAVNFRDVIAKSISVKFQEGQTVSGGGMGGCQPGGVVQSQQPIMTDPSP 991


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +3

Query: 111 LTKIRRGTATKVTWTSTVARKFAAKNTSHATISRECTGL 227
           L K+      K T T  +ARK   KNT+    SR  + L
Sbjct: 327 LKKVNSKYILKSTLTPKLARKQFQKNTTGLERSRSWSSL 365


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +2

Query: 191 EPCYYFKRVYRSLCPNEWVDKWTTSAPKTFAGRI*ILNVPDA 316
           EP YY   + +   P + V K ++  P  F     + N P+A
Sbjct: 209 EPIYYNLTMVKLNWPKKRVTKMSSINPCIFDNATIVNNGPEA 250


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 7/26 (26%), Positives = 12/26 (46%)
 Frame = -1

Query: 205 IVAWLVFFAANFLATVEVHVTLVAVP 128
           ++ WL FF  N +  +   +T    P
Sbjct: 629 LICWLPFFTCNIMDAICTKLTADCQP 654


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -1

Query: 280 EGLRRAGCPLVDPLIG 233
           +GL + GC +++P  G
Sbjct: 92  KGLLKPGCTIIEPTSG 107


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 270 GALVVHLSTHSL 235
           GAL +H+ TH+L
Sbjct: 30  GALKMHIRTHTL 41


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 295 LNPTGEGLRRAGCPLVDPLIGAERPV 218
           L P G+ L  +  P   PL+  E P+
Sbjct: 18  LGPAGQVLAGSSSPRPKPLLKKEYPL 43


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,356
Number of Sequences: 438
Number of extensions: 2315
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)