Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30858
(406 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g57815.1 68418.m07230 cytochrome c oxidase subunit 6b, putati... 93 8e-20
At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putati... 87 6e-18
At4g28060.1 68417.m04025 cytochrome c oxidase subunit 6b, putati... 85 2e-17
At1g32710.1 68414.m04034 cytochrome c oxidase subunit VIb family... 53 6e-08
At2g34710.1 68415.m04263 homeobox-leucine zipper transcription f... 32 0.17
At1g30490.1 68414.m03727 homeobox-leucine zipper transcription f... 31 0.29
At4g32880.1 68417.m04679 homeobox-leucine zipper transcription f... 29 1.6
At1g01240.3 68414.m00041 expressed protein 28 2.1
At1g01240.2 68414.m00040 expressed protein 28 2.1
At1g01240.1 68414.m00039 expressed protein 28 2.1
At1g52150.2 68414.m05885 homeobox-leucine zipper family protein ... 28 2.7
At1g52150.1 68414.m05884 homeobox-leucine zipper family protein ... 28 2.7
At5g44220.1 68418.m05410 F-box family protein similar to unknown... 27 3.6
At1g61140.1 68414.m06888 SNF2 domain-containing protein / helica... 27 3.6
At5g60690.1 68418.m07616 homeodomain-leucine zipper protein Revo... 27 4.8
At4g34390.1 68417.m04885 extra-large guanine nucleotide binding ... 27 4.8
At1g50410.1 68414.m05650 SNF2 domain-containing protein / helica... 27 4.8
At4g00060.1 68417.m00006 nucleotidyltransferase family protein c... 27 6.3
At1g71696.2 68414.m08283 carboxypeptidase D, putative similar to... 27 6.3
At1g71696.1 68414.m08284 carboxypeptidase D, putative similar to... 27 6.3
At5g54010.1 68418.m06718 glycosyltransferase family protein cont... 26 8.3
At3g16260.1 68416.m02051 metallo-beta-lactamase family protein 26 8.3
>At5g57815.1 68418.m07230 cytochrome c oxidase subunit 6b, putative
similar to subunit 6b of cytochrome c oxidase
[Arabidopsis thaliana] gi|6518353|dbj|BAA87883
Length = 78
Score = 92.7 bits (220), Expect = 8e-20
Identities = 38/71 (53%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Frame = +2
Query: 77 DLKTAPFDPRFPNQNQTRHCYQSYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEWVDKW 256
+LKTAP D RFP NQTRHC+ Y++FHRC +GE+ C F + YR+LCP EWVDKW
Sbjct: 6 ELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEESNDCERFAKYYRALCPGEWVDKW 65
Query: 257 TTSAPK-TFAG 286
TF G
Sbjct: 66 NEQRESGTFPG 76
>At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putative
(COX6b) nearly identical to subunit 6b of cytochrome c
oxidase [Arabidopsis thaliana] GI:6518353
Length = 191
Score = 86.6 bits (205), Expect = 6e-18
Identities = 36/70 (51%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Frame = +2
Query: 80 LKTAPFDPRFPNQNQTRHCYQSYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEWVDKWT 259
L+TAP D RFP NQTRHC+ YV++HRC +G+ C F + YRSLCP+EWVD+W
Sbjct: 119 LETAPADFRFPTTNQTRHCFTRYVEYHRCVAAKGDDAPECDKFAKFYRSLCPSEWVDRWN 178
Query: 260 TSAPK-TFAG 286
TF G
Sbjct: 179 EQRENGTFPG 188
>At4g28060.1 68417.m04025 cytochrome c oxidase subunit 6b, putative
similar to subunit 6b of cytochrome c oxidase
[Arabidopsis thaliana] gi|6518353|dbj|BAA87883
Length = 164
Score = 84.6 bits (200), Expect = 2e-17
Identities = 39/86 (45%), Positives = 48/86 (55%), Gaps = 7/86 (8%)
Frame = +2
Query: 50 MPEMIKSPADLKTAPFDPRFPNQNQTRHCYQSYVDFHR------CQKVRGEKYEPCYYFK 211
+ +K +LKTAP D RFP NQTRHC+ Y++FHR C +GE C F
Sbjct: 77 LARFLKPRIELKTAPADFRFPTTNQTRHCFTRYIEFHRYSCVIECTTAKGEDANECERFA 136
Query: 212 RVYRSLCPNEWVDKWTTSAPK-TFAG 286
+ YR+LCP EWVDKW TF G
Sbjct: 137 KYYRALCPGEWVDKWNEQRETGTFPG 162
>At1g32710.1 68414.m04034 cytochrome c oxidase subunit VIb family
contains similarity to subunit 6b of cytochrome c
oxidase [Arabidopsis thaliana] GI:6518353; contains Pfam
profile PF02297: Cytochrome oxidase c subunit VIb
Length = 134
Score = 53.2 bits (122), Expect = 6e-08
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +2
Query: 89 APFDPRFPNQNQTRHCYQSYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEWVDK-WTTS 265
A + RFP N+TRHC+ ++ +H+C + G C + RS+CP E V K W S
Sbjct: 59 AAVEERFPVTNETRHCFNRFMQYHKCIEKNGRDANDCNNLRDYVRSICPEELVSKIWLKS 118
>At2g34710.1 68415.m04263 homeobox-leucine zipper transcription
factor (HB-14) identical to homeodomain transcription
factor (ATHB-14)GP:3132474 GB:Y11122 [Arabidopsis
thaliana];
Length = 852
Score = 31.9 bits (69), Expect = 0.17
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +3
Query: 120 IRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGQPAR 269
+ + T T V W + K + ISR C+G++A G S +P +
Sbjct: 183 LSKATGTAVDWVQMIGMKPGPDSIGIVAISRNCSGIAARACGLVSLEPMK 232
>At1g30490.1 68414.m03727 homeobox-leucine zipper transcription
factor (HB-9) identical to HD-Zip protein GB:CAA71854
GI:2145358 from [Arabidopsis thaliana]
Length = 841
Score = 31.1 bits (67), Expect = 0.29
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +3
Query: 126 RGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGQPAR 269
+ T T V W + K + +SR C+G++A G S +P +
Sbjct: 181 KATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGIAARACGLVSLEPMK 228
>At4g32880.1 68417.m04679 homeobox-leucine zipper transcription
factor (HB-8) identical to HD-zip transcription factor
(athb-8) (GI:7270235) [Arabidopsis thaliana]
Length = 833
Score = 28.7 bits (61), Expect = 1.6
Identities = 15/50 (30%), Positives = 19/50 (38%)
Frame = +3
Query: 120 IRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGQPAR 269
I + T T V W K + IS CTG++A G P R
Sbjct: 169 ISKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGIAARACGLVGLDPTR 218
>At1g01240.3 68414.m00041 expressed protein
Length = 331
Score = 28.3 bits (60), Expect = 2.1
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +3
Query: 72 PPTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTSH--ATISRECTGLSAPMSG 245
PP K H S H S + TA K W V + ++ S+ +T S+ + +S+P S
Sbjct: 147 PPPQKLHKSIHSSSGEKGFKTAVKSPWKQGVWKDRFERSLSYNGSTESKNTSPMSSPRSD 206
Query: 246 STS 254
S
Sbjct: 207 DLS 209
>At1g01240.2 68414.m00040 expressed protein
Length = 331
Score = 28.3 bits (60), Expect = 2.1
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +3
Query: 72 PPTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTSH--ATISRECTGLSAPMSG 245
PP K H S H S + TA K W V + ++ S+ +T S+ + +S+P S
Sbjct: 147 PPPQKLHKSIHSSSGEKGFKTAVKSPWKQGVWKDRFERSLSYNGSTESKNTSPMSSPRSD 206
Query: 246 STS 254
S
Sbjct: 207 DLS 209
>At1g01240.1 68414.m00039 expressed protein
Length = 331
Score = 28.3 bits (60), Expect = 2.1
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +3
Query: 72 PPTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTSH--ATISRECTGLSAPMSG 245
PP K H S H S + TA K W V + ++ S+ +T S+ + +S+P S
Sbjct: 147 PPPQKLHKSIHSSSGEKGFKTAVKSPWKQGVWKDRFERSLSYNGSTESKNTSPMSSPRSD 206
Query: 246 STS 254
S
Sbjct: 207 DLS 209
>At1g52150.2 68414.m05885 homeobox-leucine zipper family protein /
lipid-binding START domain-containing protein similar to
to HD-zip transcription factor (athb-8) (GI:7270235)
[Arabidopsis thaliana]; contains Pfam profiles PF01852:
START domain, PF00046: Homeobox domain
Length = 837
Score = 27.9 bits (59), Expect = 2.7
Identities = 14/50 (28%), Positives = 20/50 (40%)
Frame = +3
Query: 120 IRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGQPAR 269
+ + T T V W K + IS CTG++A G +P R
Sbjct: 170 LSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGVAARACGLVGLEPTR 219
>At1g52150.1 68414.m05884 homeobox-leucine zipper family protein /
lipid-binding START domain-containing protein similar to
to HD-zip transcription factor (athb-8) (GI:7270235)
[Arabidopsis thaliana]; contains Pfam profiles PF01852:
START domain, PF00046: Homeobox domain
Length = 836
Score = 27.9 bits (59), Expect = 2.7
Identities = 14/50 (28%), Positives = 20/50 (40%)
Frame = +3
Query: 120 IRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGQPAR 269
+ + T T V W K + IS CTG++A G +P R
Sbjct: 170 LSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGVAARACGLVGLEPTR 219
>At5g44220.1 68418.m05410 F-box family protein similar to unknown
protein (pir||T06086)
Length = 295
Score = 27.5 bits (58), Expect = 3.6
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Frame = +2
Query: 41 ISNMPEMIKSPADLKTAPFDPRF--PNQNQTRHCYQSYVDFHRCQKVRGEKYEPC--YY 205
+++ E+I +P L P+ + P + TR + H C+ +R +K PC YY
Sbjct: 225 VTDAGELILAPISLPDPPYYVIYYDPQRQSTRKVVIRGITEHNCKLLRCKKRHPCILYY 283
>At1g61140.1 68414.m06888 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
similar to ATPase [Homo sapiens] GI:531196; contains
Pfam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain, PF00097:
Zinc finger, C3HC4 type (RING finger)
Length = 1287
Score = 27.5 bits (58), Expect = 3.6
Identities = 18/64 (28%), Positives = 26/64 (40%)
Frame = +3
Query: 72 PPTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGST 251
PP SK+ S + + G KV+W V + + ++R C GL A
Sbjct: 769 PPDSKKKGSKKKKV-EFLSGPLAKVSWFRVVLDEAQSIKNYKTQVARACWGLRAKRRWCL 827
Query: 252 SGQP 263
SG P
Sbjct: 828 SGTP 831
>At5g60690.1 68418.m07616 homeodomain-leucine zipper protein
Revoluta (REV) / fascicular fiberless 1 (IFL1) identical
to HD-zip transcription factor Revoluta (GI:9759333)
{Arabidopsis thaliana}; contains Pfam profiles PF01852:
START domain and PF00046: Homeobox domain
Length = 842
Score = 27.1 bits (57), Expect = 4.8
Identities = 13/50 (26%), Positives = 21/50 (42%)
Frame = +3
Query: 120 IRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGQPAR 269
+ + T T V W K + IS+ C G++A G S +P +
Sbjct: 170 LSKATGTAVDWVQMPGMKPGPDSVGIFAISQRCNGVAARACGLVSLEPMK 219
>At4g34390.1 68417.m04885 extra-large guanine nucleotide binding
protein, putative / G-protein, putative similar to
extra-large G-protein (XLG) [Arabidopsis thaliana]
GI:3201680; contains Pfam profile PF00503: G-protein
alpha subunit
Length = 861
Score = 27.1 bits (57), Expect = 4.8
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 47 NMPEMIKSPADLKTAPFDPRFPNQNQTRH 133
++PE +KSPAD + +P P + + H
Sbjct: 134 DVPEEVKSPADFRLSPSSPLSASAREEDH 162
>At1g50410.1 68414.m05650 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 981
Score = 27.1 bits (57), Expect = 4.8
Identities = 14/45 (31%), Positives = 17/45 (37%)
Frame = +3
Query: 129 GTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGQP 263
GT KV W V + ++R C GL A SG P
Sbjct: 464 GTLAKVGWFRVVLDEAQTIKNHRTQVARACCGLRAKRRWCLSGTP 508
>At4g00060.1 68417.m00006 nucleotidyltransferase family protein
contains Pfam profile: PF01909 nucleotidyltransferase
domain
Length = 839
Score = 26.6 bits (56), Expect = 6.3
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 98 DPRFPNQNQTRHCYQSYVDFHRCQKVRGEKY 190
DP FP N R+C++ H+C K E Y
Sbjct: 777 DPLFPTNNVGRNCFR----IHQCIKAFSEAY 803
>At1g71696.2 68414.m08283 carboxypeptidase D, putative similar to
carboxypeptidase D [Anas platyrhynchos]
gi|2789654|gb|AAB96915
Length = 491
Score = 26.6 bits (56), Expect = 6.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 119 NQTRHCYQSYVDFHRCQKVRGEKYE 193
N T +Q+Y D+HR V G+KYE
Sbjct: 366 NYTVKAHQTYADYHRL-LVPGQKYE 389
>At1g71696.1 68414.m08284 carboxypeptidase D, putative similar to
carboxypeptidase D [Anas platyrhynchos]
gi|2789654|gb|AAB96915
Length = 422
Score = 26.6 bits (56), Expect = 6.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 119 NQTRHCYQSYVDFHRCQKVRGEKYE 193
N T +Q+Y D+HR V G+KYE
Sbjct: 297 NYTVKAHQTYADYHRL-LVPGQKYE 320
>At5g54010.1 68418.m06718 glycosyltransferase family protein
contains Pfam profile: PF00201 UDP-glucoronosyl and
UDP-glucosyl transferase
Length = 453
Score = 26.2 bits (55), Expect = 8.3
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +3
Query: 150 WTSTVARKFAAKNTSHATISRECTGLS 230
W +AR++ K+ + TIS C +S
Sbjct: 118 WIPEIAREYGVKSVNFITISAACVAIS 144
>At3g16260.1 68416.m02051 metallo-beta-lactamase family protein
Length = 937
Score = 26.2 bits (55), Expect = 8.3
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +3
Query: 183 KNTSHATISRECTGLSAPMSGSTSGQPARRRPSPVGFR 296
K++S A I R + L P+ S+S P+RR P G+R
Sbjct: 14 KSSSFALILRPFS-LYPPIFASSSPAPSRRPPRTAGYR 50
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,474,288
Number of Sequences: 28952
Number of extensions: 172101
Number of successful extensions: 473
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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