Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30854
(765 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 157 1e-39
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 91 2e-19
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 85 1e-17
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 75 1e-14
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 71 1e-13
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 47 3e-06
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 45 1e-05
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 45 1e-05
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 38 0.002
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.7
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 26 5.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 6.8
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 6.8
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 25 9.0
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 25 9.0
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 9.0
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 25 9.0
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar... 25 9.0
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 25 9.0
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 25 9.0
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 157 bits (382), Expect = 1e-39
Identities = 74/83 (89%), Positives = 76/83 (91%)
Frame = +1
Query: 1 IKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEA 180
IKEKLCYVALDFEQE+ TAA SSSLEKSYELPDGQVITIGNERFR PEALFQPS LG+E
Sbjct: 212 IKEKLCYVALDFEQELQTAAQSSSLEKSYELPDGQVITIGNERFRAPEALFQPSALGLEN 271
Query: 181 CGIHETTYNSIMKCDVDIRKDLY 249
GIHE TYNSIMKCDVDIRKDLY
Sbjct: 272 AGIHEATYNSIMKCDVDIRKDLY 294
Score = 157 bits (382), Expect = 1e-39
Identities = 72/83 (86%), Positives = 77/83 (92%)
Frame = +3
Query: 243 LVRQTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 422
L V+SGGTTMYPGIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGGSILASLSTF
Sbjct: 293 LYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTF 352
Query: 423 QQMWISKQEYDESGPSIVHRKCF 491
QQMWISKQEYDESGP IV+RKCF
Sbjct: 353 QQMWISKQEYDESGPGIVYRKCF 375
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 91.1 bits (216), Expect = 2e-19
Identities = 40/83 (48%), Positives = 57/83 (68%)
Frame = +1
Query: 1 IKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEA 180
+KEKLCYV+ D E + + ++ L ++Y LPDG+VI +G+ER+ CPE LFQP +G E
Sbjct: 212 MKEKLCYVSYDLELDHKLSEETTVLMRNYTLPDGRVIKVGSERYECPECLFQPHLVGSEQ 271
Query: 181 CGIHETTYNSIMKCDVDIRKDLY 249
G+ E +++I DVDIRK LY
Sbjct: 272 PGLSEFIFDTIQAADVDIRKYLY 294
Score = 58.8 bits (136), Expect = 8e-10
Identities = 34/86 (39%), Positives = 53/86 (61%), Gaps = 12/86 (13%)
Frame = +3
Query: 243 LVRQTVLSGGTTMYPGIADRMQKEITAL--------APSTM---KIKIIAPPERKYSVWI 389
L R VLSGG++MY G+ R++KEI L P+ + K+KI P R+++V+I
Sbjct: 293 LYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFI 352
Query: 390 GGSILAS-LSTFQQMWISKQEYDESG 464
GG++LA ++ MW+SK E++E G
Sbjct: 353 GGAVLADIMAQNDHMWVSKAEWEEYG 378
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 85.0 bits (201), Expect = 1e-17
Identities = 38/84 (45%), Positives = 50/84 (59%)
Frame = +1
Query: 1 IKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEA 180
IKEK CYVA DF E+ + +Y+LPD Q IT+G E F PE LF P +G EA
Sbjct: 217 IKEKCCYVASDFRSEIESWTEHKPQIHTYQLPDNQTITLGTECFSAPEVLFNPEMMGSEA 276
Query: 181 CGIHETTYNSIMKCDVDIRKDLYA 252
G+H + SI+ D+D+R LY+
Sbjct: 277 SGLHIQLFKSILLSDIDLRSTLYS 300
Score = 73.3 bits (172), Expect = 3e-14
Identities = 34/83 (40%), Positives = 56/83 (67%)
Frame = +3
Query: 243 LVRQTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 422
L VLSGG+T+ G +R E+ A++ ++KI A PER ++ W+GGSILASLSTF
Sbjct: 298 LYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTF 357
Query: 423 QQMWISKQEYDESGPSIVHRKCF 491
+++ I+ +EY ++ +++ R+ F
Sbjct: 358 RRLLITSEEY-KNDQNVIFRRRF 379
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 74.9 bits (176), Expect = 1e-14
Identities = 36/88 (40%), Positives = 59/88 (67%), Gaps = 6/88 (6%)
Frame = +3
Query: 243 LVRQTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASL 413
L+ ++ GGT++ G + R+Q E++ L P + ++KI A ER Y+ W+GGSIL+SL
Sbjct: 346 LLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSL 404
Query: 414 STFQQMWISKQEYDESGP---SIVHRKC 488
TF Q+WIS+QEY+E G +++ ++C
Sbjct: 405 GTFHQLWISRQEYEEHGSDRLALIEKRC 432
Score = 33.1 bits (72), Expect(2) = 7e-04
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 55 AASSSSLEKSYELPDGQVITIGNERFRCPEALFQP 159
++ ++ E +E PDG + G ER++ PE LF P
Sbjct: 254 SSETTIAESEFEFPDGSRMMFGAERYQIPEHLFVP 288
Score = 25.0 bits (52), Expect(2) = 7e-04
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 184 GIHETTYNSIMKCDVDIRKDL 246
GI + N I +CDVDIR L
Sbjct: 326 GIPQLFQNCISECDVDIRASL 346
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 71.3 bits (167), Expect = 1e-13
Identities = 34/76 (44%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
Frame = +3
Query: 243 LVRQTVLSGGTTMYPGIADRMQKEITALAP-STMKIKIIAPPER-KYSVWIGGSILASLS 416
L+ V++GGT++ PG+++R+Q E+ LA S + + +VW GGSILASL
Sbjct: 343 LLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLD 402
Query: 417 TFQQMWISKQEYDESG 464
FQ +W+SKQEYDE G
Sbjct: 403 NFQHLWVSKQEYDEVG 418
Score = 52.4 bits (120), Expect = 7e-08
Identities = 29/73 (39%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Frame = +1
Query: 55 AASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEAC---------GIHETTYN 207
A +SS K +E PDG G ERFR E LF PSF + G+HE Y
Sbjct: 271 AKASSRNPKPFEFPDGVTHKFGQERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQ 330
Query: 208 SIMKCDVDIRKDL 246
SI+ CD ++R L
Sbjct: 331 SILACDSELRSPL 343
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 47.2 bits (107), Expect = 3e-06
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 14/95 (14%)
Frame = +3
Query: 240 GLVRQTVLSGGTTMYPGIADRMQKEITALAPSTMK--------------IKIIAPPERKY 377
GL + VLSGG+T++ +R+Q+++ + + + +I+ ++
Sbjct: 325 GLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRN 384
Query: 378 SVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 482
+VW GGS+LA F +K +Y+E G SI R
Sbjct: 385 AVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
Score = 38.7 bits (86), Expect = 9e-04
Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Frame = +1
Query: 1 IKEKLCYVALDFEQEMATAASSSS--LEKSYELPDGQVITI--GNERFRCPEALFQPSFL 168
IKE+ CYV D +E + L+ + E G TI G ERF PE F P
Sbjct: 240 IKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIA 299
Query: 169 GME-ACGIHETTYNSIMKCDVDIRKDLY 249
+ + E N + +D+RK LY
Sbjct: 300 SSDFLTPLPELVDNVVQSSPIDVRKGLY 327
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 45.2 bits (102), Expect = 1e-05
Identities = 24/81 (29%), Positives = 40/81 (49%)
Frame = +3
Query: 243 LVRQTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 422
L+ V GG +PG R+ E+ +LAP+ ++K+ P + W S + L +
Sbjct: 319 LLENVVTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHW 377
Query: 423 QQMWISKQEYDESGPSIVHRK 485
I++ EY E G +I+ RK
Sbjct: 378 NANKITRSEYSEHGANIMTRK 398
Score = 44.4 bits (100), Expect = 2e-05
Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 20/91 (21%)
Frame = +1
Query: 1 IKEKLCYVALDFEQEMATAASS--SSLEKSYELPD------------------GQVITIG 120
IKE +CYV+ +F+++M S LE Y LPD QV+ +
Sbjct: 218 IKESVCYVSQNFKEDMEICHEKPRSKLEICYALPDYSTGKHGYIVRDINQKIEQQVLNLS 277
Query: 121 NERFRCPEALFQPSFLGMEACGIHETTYNSI 213
NERF PE LF PS + + GI E S+
Sbjct: 278 NERFMIPELLFSPSDIEIREAGIPEAVMQSV 308
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 45.2 bits (102), Expect = 1e-05
Identities = 20/78 (25%), Positives = 38/78 (48%)
Frame = +3
Query: 243 LVRQTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 422
LV +++GG PG+ R+++E+T++ P I + W G S + F
Sbjct: 634 LVSNVLITGGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKF 693
Query: 423 QQMWISKQEYDESGPSIV 476
+ ++++EY E GP +
Sbjct: 694 KAAKVTREEYLEKGPEYI 711
Score = 29.5 bits (63), Expect = 0.55
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +1
Query: 124 ERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDL 246
E+ R PE +F PS +G++ GI E + + + ++ ++ L
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKL 634
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 37.5 bits (83), Expect = 0.002
Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Frame = +3
Query: 243 LVRQTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASL 413
L ++ GG +PG A +++ I + + I +I PP + ++ W G I +
Sbjct: 529 LYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYNRI 588
Query: 414 STFQQMWISKQEYDESGPSIVHRK 485
++WI ++ G ++ K
Sbjct: 589 RIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = +3
Query: 384 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 485
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 26.2 bits (55), Expect = 5.1
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +1
Query: 211 IMKCDVDIRKDLYAKPYCPVV 273
+ C V++R ++YA+ CP+V
Sbjct: 478 LFACPVELRPEVYARMLCPLV 498
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 6.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 376 TPYGSVDRSSPPSLPSNRCGSRNRSTTSLAPP 471
TP + PPS+PS+R R S ++ APP
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 6.8
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 309 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 419
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 25.4 bits (53), Expect = 9.0
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +2
Query: 17 ATSLLTSSRKWPPLHPAAPSRSLTNFPTVRSSLSETKDSVAQRLSSNP 160
A + ++S R PP +P+AP+R PTV++S S A+ ++ P
Sbjct: 345 APTTVSSERNAPP-YPSAPTRPTP--PTVQTSSSAAPVDSAEPVAYQP 389
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 9.0
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = +2
Query: 266 RWYHHVPWNRRPYAKGNHSSRPIDNED*DHCSSREEVLRMDRWIDPRLPLYLPTDVDLET 445
RWY PW + KG+ + +E + SSR + + W+D YL +++D+ +
Sbjct: 483 RWYE--PW----FVKGDLN---YTSEVKERTSSRLSAVGSENWVDDDFYEYLLSEIDMVS 533
Query: 446 GV 451
V
Sbjct: 534 AV 535
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 25.4 bits (53), Expect = 9.0
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = +2
Query: 50 PPLHPAAPSRSLTNFPTVRSSLSETKDSVAQRLSSNPRSWVWKLAASTRPHITPS 214
PP+ +PS SL P S + + S R ++ +S + K + P T S
Sbjct: 217 PPIEEYSPSVSLPTSPVAEESYNNVQRSSTVRNNTTQKSVLKKPSRKMSPAYTSS 271
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 25.4 bits (53), Expect = 9.0
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -1
Query: 114 SDDLTVGKFVRLLEGAAGCSGGHFLLEVKSDVAQLLL 4
+D VG+ L+ GAAG S GHF EV + + +LL
Sbjct: 350 ADSTFVGRAASLV-GAAGQSQGHF-TEVLNGIGTILL 384
>SPBC530.14c |dsk1||SR protein-specific kinase
Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 25.4 bits (53), Expect = 9.0
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +2
Query: 5 RRSCATSLLTSSRKWPPLHPAAPSRS-LTNFPTVRSSLSETKDSVAQRLSSNPRS 166
R++ A + +S+ + P++P S L+ FP++ ++SE +Q+ +S+P S
Sbjct: 276 RKTFAKNPTKNSKPAGQVIPSSPFTSTLSRFPSLEGAVSEISLRDSQKHNSHPNS 330
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 25.4 bits (53), Expect = 9.0
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Frame = +2
Query: 389 RWIDPRLPLYLPTDVDLETGVRRVWPLHCTQEVL----LNAPRVLPP 517
+W+D YLP V L TG W + C L L R+LPP
Sbjct: 629 KWMD-----YLPRPVILVTGSIHFWSIACDDGSLHLYSLTGSRLLPP 670
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 25.4 bits (53), Expect = 9.0
Identities = 27/102 (26%), Positives = 43/102 (42%)
Frame = +2
Query: 29 LTSSRKWPPLHPAAPSRSLTNFPTVRSSLSETKDSVAQRLSSNPRSWVWKLAASTRPHIT 208
L SS+ PP PA R NF + R S S + S S L+ ST P
Sbjct: 183 LQSSQHIPPSTPAQKLRKKNNFDSFRISNSHISPFASGSFSPFATSSPNFLSTST-PAPP 241
Query: 209 PS*SATWTSVRTCTPNRIVRWYHHVPWNRRPYAKGNHSSRPI 334
S +A +++ + P+ +H P N + + ++RP+
Sbjct: 242 NSNNANPSTLFSSIPSSRHTTSNHFPSNSAQSSLFSPTARPL 283
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,164,586
Number of Sequences: 5004
Number of extensions: 67652
Number of successful extensions: 238
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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