Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30854
(765 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 173 2e-43
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 172 2e-43
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 172 2e-43
SB_56| Best HMM Match : Actin (HMM E-Value=0) 172 2e-43
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 169 2e-42
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 169 2e-42
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 143 2e-34
SB_54| Best HMM Match : Actin (HMM E-Value=0) 102 3e-22
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 88 8e-18
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 55 7e-08
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 55 7e-08
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 53 3e-07
SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_30755| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.027
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 33 0.25
SB_30721| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.58
SB_48528| Best HMM Match : Extensin_2 (HMM E-Value=1) 29 4.1
SB_35820| Best HMM Match : TRAP_240kDa (HMM E-Value=0.006) 29 5.4
SB_25899| Best HMM Match : Ribonuc_2-5A (HMM E-Value=0) 29 5.4
SB_22949| Best HMM Match : rve (HMM E-Value=1.2e-19) 29 5.4
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 29 5.4
SB_8145| Best HMM Match : RNA_pol_Rpb2_6 (HMM E-Value=0) 28 7.2
SB_53874| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_12796| Best HMM Match : Radical_SAM (HMM E-Value=8.9e-24) 28 9.5
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 173 bits (420), Expect = 2e-43
Identities = 80/84 (95%), Positives = 82/84 (97%)
Frame = +1
Query: 1 IKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEA 180
IKEKLCYVALDFEQEM TAASSSSLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGME+
Sbjct: 213 IKEKLCYVALDFEQEMTTAASSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMES 272
Query: 181 CGIHETTYNSIMKCDVDIRKDLYA 252
GIHETTYNSIMKCDVDIRKDLYA
Sbjct: 273 AGIHETTYNSIMKCDVDIRKDLYA 296
Score = 164 bits (399), Expect = 6e-41
Identities = 77/83 (92%), Positives = 79/83 (95%)
Frame = +3
Query: 243 LVRQTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 422
L TVLSGG+TMYPGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTF
Sbjct: 294 LYANTVLSGGSTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTF 353
Query: 423 QQMWISKQEYDESGPSIVHRKCF 491
QQMWISKQEYDESGPSIVHRKCF
Sbjct: 354 QQMWISKQEYDESGPSIVHRKCF 376
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 172 bits (419), Expect = 2e-43
Identities = 80/84 (95%), Positives = 82/84 (97%)
Frame = +1
Query: 1 IKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEA 180
IKEKLCYVALDFEQEM TAASSSSLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGME+
Sbjct: 175 IKEKLCYVALDFEQEMQTAASSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMES 234
Query: 181 CGIHETTYNSIMKCDVDIRKDLYA 252
GIHETTYNSIMKCDVDIRKDLYA
Sbjct: 235 AGIHETTYNSIMKCDVDIRKDLYA 258
Score = 165 bits (400), Expect = 5e-41
Identities = 77/83 (92%), Positives = 79/83 (95%)
Frame = +3
Query: 243 LVRQTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 422
L TVLSGGTTMYPGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTF
Sbjct: 256 LYANTVLSGGTTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTF 315
Query: 423 QQMWISKQEYDESGPSIVHRKCF 491
QQMWISKQEYDESGP+IVHRKCF
Sbjct: 316 QQMWISKQEYDESGPAIVHRKCF 338
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 172 bits (419), Expect = 2e-43
Identities = 80/84 (95%), Positives = 82/84 (97%)
Frame = +1
Query: 1 IKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEA 180
IKEKLCYVALDFEQEM TAASSSSLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGME+
Sbjct: 213 IKEKLCYVALDFEQEMETAASSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMES 272
Query: 181 CGIHETTYNSIMKCDVDIRKDLYA 252
GIHETTYNSIMKCDVDIRKDLYA
Sbjct: 273 AGIHETTYNSIMKCDVDIRKDLYA 296
Score = 165 bits (400), Expect = 5e-41
Identities = 77/83 (92%), Positives = 79/83 (95%)
Frame = +3
Query: 243 LVRQTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 422
L TVLSGG+TMYPGIADRMQKEIT+LAP TMKIKIIAPPERKYSVWIGGSILASLSTF
Sbjct: 294 LYANTVLSGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTF 353
Query: 423 QQMWISKQEYDESGPSIVHRKCF 491
QQMWISKQEYDESGPSIVHRKCF
Sbjct: 354 QQMWISKQEYDESGPSIVHRKCF 376
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 172 bits (419), Expect = 2e-43
Identities = 80/84 (95%), Positives = 82/84 (97%)
Frame = +1
Query: 1 IKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEA 180
IKEKLCYVALDFEQEM TAASSSSLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGME+
Sbjct: 212 IKEKLCYVALDFEQEMQTAASSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMES 271
Query: 181 CGIHETTYNSIMKCDVDIRKDLYA 252
GIHETTYNSIMKCDVDIRKDLYA
Sbjct: 272 AGIHETTYNSIMKCDVDIRKDLYA 295
Score = 165 bits (400), Expect = 5e-41
Identities = 77/83 (92%), Positives = 79/83 (95%)
Frame = +3
Query: 243 LVRQTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 422
L TVLSGG+TMYPGIADRMQKEIT+LAP TMKIKIIAPPERKYSVWIGGSILASLSTF
Sbjct: 293 LYANTVLSGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTF 352
Query: 423 QQMWISKQEYDESGPSIVHRKCF 491
QQMWISKQEYDESGPSIVHRKCF
Sbjct: 353 QQMWISKQEYDESGPSIVHRKCF 375
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 169 bits (412), Expect = 2e-42
Identities = 79/84 (94%), Positives = 82/84 (97%)
Frame = +1
Query: 1 IKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEA 180
IKEKL YVALDFEQEMATAA+SSSLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGME+
Sbjct: 212 IKEKLAYVALDFEQEMATAAASSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMES 271
Query: 181 CGIHETTYNSIMKCDVDIRKDLYA 252
GIHETTYNSIMKCDVDIRKDLYA
Sbjct: 272 AGIHETTYNSIMKCDVDIRKDLYA 295
Score = 163 bits (395), Expect = 2e-40
Identities = 76/83 (91%), Positives = 79/83 (95%)
Frame = +3
Query: 243 LVRQTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 422
L TVLSGG+TM+PGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTF
Sbjct: 293 LYANTVLSGGSTMFPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTF 352
Query: 423 QQMWISKQEYDESGPSIVHRKCF 491
QQMWISKQEYDESGPSIVHRKCF
Sbjct: 353 QQMWISKQEYDESGPSIVHRKCF 375
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 169 bits (412), Expect = 2e-42
Identities = 79/84 (94%), Positives = 81/84 (96%)
Frame = +1
Query: 1 IKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEA 180
IKEKLCYVALDFEQEM TAASSSS+EKSYELPDGQVITIGNERFRCPEAL QPSFLGME+
Sbjct: 186 IKEKLCYVALDFEQEMQTAASSSSIEKSYELPDGQVITIGNERFRCPEALLQPSFLGMES 245
Query: 181 CGIHETTYNSIMKCDVDIRKDLYA 252
GIHETTYNSIMKCDVDIRKDLYA
Sbjct: 246 SGIHETTYNSIMKCDVDIRKDLYA 269
Score = 165 bits (401), Expect = 3e-41
Identities = 76/83 (91%), Positives = 80/83 (96%)
Frame = +3
Query: 243 LVRQTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 422
L TV+SGGTTMYPG+ADRMQKEI+ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF
Sbjct: 267 LYANTVMSGGTTMYPGLADRMQKEISALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 326
Query: 423 QQMWISKQEYDESGPSIVHRKCF 491
QQMWISKQEYDESGP+IVHRKCF
Sbjct: 327 QQMWISKQEYDESGPAIVHRKCF 349
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 143 bits (346), Expect = 2e-34
Identities = 65/83 (78%), Positives = 73/83 (87%)
Frame = +3
Query: 243 LVRQTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 422
L VLSGG+TM+PGIADRMQKEI LA ++MK+K+IAPPERKYSVWIGGSILASLSTF
Sbjct: 67 LYSNCVLSGGSTMFPGIADRMQKEIAMLANASMKVKVIAPPERKYSVWIGGSILASLSTF 126
Query: 423 QQMWISKQEYDESGPSIVHRKCF 491
QQMWI+K+EY E GP IVHRKCF
Sbjct: 127 QQMWIAKEEYHEYGPPIVHRKCF 149
Score = 118 bits (285), Expect = 4e-27
Identities = 53/65 (81%), Positives = 59/65 (90%)
Frame = +1
Query: 58 ASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIR 237
A+S LEK+YELPDGQVI+IGNERFRCPEA+FQP+FLGMEA GIHE YN IMKCDVDIR
Sbjct: 5 ANSPILEKTYELPDGQVISIGNERFRCPEAMFQPAFLGMEAPGIHEAIYNCIMKCDVDIR 64
Query: 238 KDLYA 252
KDLY+
Sbjct: 65 KDLYS 69
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 102 bits (245), Expect = 3e-22
Identities = 45/83 (54%), Positives = 59/83 (71%)
Frame = +1
Query: 1 IKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEA 180
+KE LCY A+D+E+E+ A +S E Y LPDGQ I IG+ERFR E LFQPS LG +
Sbjct: 2257 LKETLCYCAMDYERELKEAETSDDCEAPYMLPDGQSIRIGSERFRAAEPLFQPSLLGRDI 2316
Query: 181 CGIHETTYNSIMKCDVDIRKDLY 249
GIHE+ + SI KCD+D+R +L+
Sbjct: 2317 DGIHESIFKSIKKCDIDLRAELF 2339
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 87.8 bits (208), Expect = 8e-18
Identities = 37/83 (44%), Positives = 52/83 (62%)
Frame = +1
Query: 1 IKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEA 180
+KEKLCYV + EQE A ++ L + Y LPDG+V+ + ERF PEALFQP + +E
Sbjct: 216 MKEKLCYVGYNIEQEQKLALETTVLVEQYTLPDGRVVKLSGERFEAPEALFQPHLINVEG 275
Query: 181 CGIHETTYNSIMKCDVDIRKDLY 249
G+ E +N+I D+D R + Y
Sbjct: 276 VGVAELLFNTIQAADIDTRSEFY 298
Score = 45.6 bits (103), Expect = 4e-05
Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Frame = +3
Query: 159 LVLGYGSLRHPRDHI*LHHEVRRGHP*GLVRQTVLSGGTTMYPGIADRMQKEITA-LAPS 335
+VL GS +P L E+++ L + VL G T+ Q +TA
Sbjct: 301 IVLSGGSTMYPGLPSRLEREIKQ-----LYLERVLKGDTSKLSSGMGMEQIPLTADYLLQ 355
Query: 336 TMKIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESG 464
KI+I PP RK+ V++GG++LA + W++++EY+E G
Sbjct: 356 KFKIRIEDPPRRKHMVFMGGAVLADIMKDKDSFWMTRKEYEEKG 399
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 54.8 bits (126), Expect = 7e-08
Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 16/103 (15%)
Frame = +3
Query: 243 LVRQTVLSGGTTMYPGIADRMQKEITA----------------LAPSTMKIKIIAPPERK 374
L + VLSGG+TM+ R+Q++I + P ++ ++I+ ++
Sbjct: 242 LYKNIVLSGGSTMFRDFGRRLQRDIKRTVDARLKMSETLSGGRIKPKPIETQVISHHMQR 301
Query: 375 YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF*THR 503
Y+VW GGS+LAS F + +K +YDE GPSI F HR
Sbjct: 302 YAVWFGGSMLASTPEFYSVCHTKADYDEHGPSICRHNPF-LHR 343
Score = 34.7 bits (76), Expect = 0.083
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +1
Query: 109 ITIGNERFRCPEALFQPSFLGME-ACGIHETTYNSIMKCDVDIRKDLY 249
+ + ERF PE F P F + + E N I C +D+R+ LY
Sbjct: 196 VDVAYERFLGPEIFFHPEFSNPDFTTPLSEVVDNVIQNCPIDVRRPLY 243
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 54.8 bits (126), Expect = 7e-08
Identities = 23/61 (37%), Positives = 41/61 (67%), Gaps = 3/61 (4%)
Frame = +3
Query: 240 GLVRQTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIA---PPERKYSVWIGGSILAS 410
GL +++GG T+ G +R+ +E+ + P +M++K+I+ E++++ WIGGSILAS
Sbjct: 170 GLFNSVIVTGGNTLLQGFVERLNRELVSKTPPSMRLKLISNNSSVEKRFNPWIGGSILAS 229
Query: 411 L 413
L
Sbjct: 230 L 230
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 52.8 bits (121), Expect = 3e-07
Identities = 25/56 (44%), Positives = 35/56 (62%)
Frame = +1
Query: 1 IKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFL 168
IKEK+CY++ D +E+ ++ L K Y LPDGQ+I+IG E E LF+P L
Sbjct: 843 IKEKICYLSKDHLKEVHNYKTNEGLTKFYTLPDGQMISIGYECISSMEPLFRPDLL 898
>SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 38.3 bits (85), Expect = 0.007
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 9/81 (11%)
Frame = +3
Query: 243 LVRQTVLSGGTTMYPGIADRMQKEITALAPS--------TMKIKIIAPP-ERKYSVWIGG 395
L VL GGT M PG R+ +EI L S +K+ PP + W+GG
Sbjct: 77 LAENIVLIGGTAMTPGFKHRLMQEIYLLLQSPKYKDKLFIKTVKMHQPPVNANITAWLGG 136
Query: 396 SILASLSTFQQMWISKQEYDE 458
+I SL +++ Y +
Sbjct: 137 AIFGSLEVLADRSTTRERYQQ 157
>SB_30755| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 906
Score = 36.3 bits (80), Expect = 0.027
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Frame = +2
Query: 17 ATSLLTSSRKWPPL--HPAAPSRSLTNFP---TVRSSLSETKDSVAQRLSSNPRSWVWKL 181
+TS +T S K+PP+ +PA PS L P TV SLS T S+P S V L
Sbjct: 452 STSSITGSSKYPPVSPNPAKPSNILFEGPSSSTVFKSLSPTDQMSNSPSQSSPGSSVSDL 511
Query: 182 AASTRPHI 205
+ S+ P++
Sbjct: 512 SCSSDPNV 519
Score = 27.9 bits (59), Expect = 9.5
Identities = 27/105 (25%), Positives = 47/105 (44%)
Frame = +2
Query: 14 CATSLLTSSRKWPPLHPAAPSRSLTNFPTVRSSLSETKDSVAQRLSSNPRSWVWKLAAST 193
CA ++ + ++ LH S S ++ PT+ + S T+DSV +S+ + V K+ T
Sbjct: 779 CAENISSDQQESMALHTKPKSLSSSDLPTMVVTHSATRDSVT--VSTPILANVSKVGTGT 836
Query: 194 RPHITPS*SATWTSVRTCTPNRIVRWYHHVPWNRRPYAKGNHSSR 328
H P T S+ +P H+P + R +H S+
Sbjct: 837 --HNKPKSCETGESMTAMSPG------IHMPMDTRRVNSSSHGSQ 873
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 33.1 bits (72), Expect = 0.25
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = +1
Query: 1 IKEKLCYVALDFEQEM 48
IKEKLCYVALDF QE+
Sbjct: 91 IKEKLCYVALDFYQEI 106
>SB_30721| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 40
Score = 31.9 bits (69), Expect = 0.58
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +1
Query: 139 PEALFQPSFLGMEACGIHET 198
PE +FQPS LG+E GI ET
Sbjct: 3 PEIIFQPSMLGLEQAGITET 22
>SB_48528| Best HMM Match : Extensin_2 (HMM E-Value=1)
Length = 329
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 69 LPREVLRTSRRSGHHYRKRKIPLPRGSLP 155
LPR ++R HY++ +PLPRG P
Sbjct: 132 LPRGGSPLTKRRESHYQEEGVPLPRGGSP 160
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 69 LPREVLRTSRRSGHHYRKRKIPLPRGSLP 155
LPR ++R HY++ +PLPRG P
Sbjct: 154 LPRGGSPLTKRRESHYQEEGVPLPRGGGP 182
>SB_35820| Best HMM Match : TRAP_240kDa (HMM E-Value=0.006)
Length = 1382
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 11 SCATSLLTSSRKWPPLHPAAPSRSLTNFPTVRSSLSETKDSV 136
SCA S+ + L PA+P+ S++ F T++ T+ S+
Sbjct: 970 SCAEPRSIDSKHYTALSPASPASSISCFSTLQLKQMPTRSSI 1011
>SB_25899| Best HMM Match : Ribonuc_2-5A (HMM E-Value=0)
Length = 603
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +3
Query: 75 REVLRTSRRSGHHYRKRKIPLPR--GSLPTLVLGYGSLRHPR 194
R++LR R HHYR+ + R G++P + Y + R PR
Sbjct: 521 RDLLRALRNKKHHYRELPDEVKRSLGTIPDEYVRYFTSRFPR 562
>SB_22949| Best HMM Match : rve (HMM E-Value=1.2e-19)
Length = 158
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 107 SSLSETKDSVAQRLSSNPRSWVWK 178
S+ SETK SV +R + + W+W+
Sbjct: 96 STKSETKASVVERFNRTSKEWMWR 119
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 4 KEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPE 144
+EK+ L+ E E A ++ LEK +L + +G+ER RC +
Sbjct: 2983 REKIVTSDLESELETERALQANELEKQNKLLEKLSADLGHERSRCED 3029
>SB_8145| Best HMM Match : RNA_pol_Rpb2_6 (HMM E-Value=0)
Length = 893
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 105 LTVGKFVRLLEGAAGCSGGHF 43
+TVGK + L+ G AG GHF
Sbjct: 366 MTVGKLIELIAGKAGVLEGHF 386
>SB_53874| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 174
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +2
Query: 59 HPAAPSRSLTNFPTVRSSLSETKDSVAQRLSSNPRSWVWKLAASTRPHI 205
HP SR +N P V S + V R+ SN V+ S +PH+
Sbjct: 113 HPHVYSRVKSNHPHVYSRVKSNHPHVYSRVKSN-HPHVYSRVKSNQPHV 160
>SB_12796| Best HMM Match : Radical_SAM (HMM E-Value=8.9e-24)
Length = 676
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +2
Query: 59 HPAAPSRSLTNFPTVRSSLSETKDSVAQRLSSNPRSWVWKLAASTRPHI 205
HP SR +N P V S + V R+ SN V+ S +PH+
Sbjct: 615 HPHVYSRVKSNHPHVYSRVKSNHPHVYSRVKSN-HPHVYSRVKSNQPHV 662
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,707,771
Number of Sequences: 59808
Number of extensions: 568924
Number of successful extensions: 1820
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1799
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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