Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30854
(765 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to S... 157 8e-39
At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493 A... 157 8e-39
At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496... 157 8e-39
At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671 A... 157 8e-39
At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292 A... 152 2e-37
At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292 A... 152 2e-37
At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293 A... 152 2e-37
At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494 A... 152 3e-37
At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497... 152 3e-37
At2g42100.1 68415.m05205 actin, putative very strong similarity ... 146 2e-35
At2g42170.1 68415.m05219 actin, putative similar to actin 2 [Ara... 136 1e-32
At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Ac... 118 3e-27
At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary id... 88 5e-18
At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly i... 83 1e-16
At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identica... 79 3e-15
At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly i... 66 2e-11
At5g56180.1 68418.m07008 actin-related protein, putative (ARP8) ... 55 5e-08
At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identica... 48 5e-06
At5g56180.2 68418.m07009 actin-related protein, putative (ARP8) ... 45 5e-05
At3g12380.1 68416.m01543 actin/actin-like family protein similar... 43 2e-04
At5g43500.2 68418.m05318 expressed protein 31 0.64
At5g43500.1 68418.m05319 expressed protein 31 0.64
At4g30340.1 68417.m04312 diacylglycerol kinase family protein co... 31 0.64
At1g63540.1 68414.m07183 hydroxyproline-rich glycoprotein family... 31 1.1
At1g18280.1 68414.m02282 protease inhibitor/seed storage/lipid t... 31 1.1
At1g69270.1 68414.m07941 leucine-rich repeat family protein / pr... 30 1.5
At1g20950.1 68414.m02623 pyrophosphate--fructose-6-phosphate 1-p... 30 1.5
At5g46330.1 68418.m05703 leucine-rich repeat transmembrane prote... 30 1.9
At3g14720.1 68416.m01861 mitogen-activated protein kinase, putat... 29 2.6
At2g18730.1 68415.m02181 diacylglycerol kinase, putative contain... 29 2.6
At4g24175.1 68417.m03469 expressed protein 29 4.5
At4g00750.1 68417.m00102 dehydration-responsive family protein s... 29 4.5
At2g39440.1 68415.m04841 expressed protein 29 4.5
At5g61010.1 68418.m07653 exocyst subunit EXO70 family protein le... 28 5.9
At2g42760.1 68415.m05295 expressed protein 28 5.9
At5g60050.1 68418.m07530 PRLI-interacting factor-related contain... 28 7.8
At4g19110.1 68417.m02819 protein kinase, putative contains prote... 28 7.8
At2g33780.1 68415.m04143 VQ motif-containing protein contains PF... 28 7.8
At1g63930.1 68414.m07238 expressed protein ; expression supporte... 28 7.8
>At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to
SP|P53492 Actin 7 (Actin-2) {Arabidopsis thaliana}
Length = 377
Score = 157 bits (381), Expect = 8e-39
Identities = 71/78 (91%), Positives = 76/78 (97%)
Frame = +3
Query: 258 VLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 437
VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI
Sbjct: 300 VLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI 359
Query: 438 SKQEYDESGPSIVHRKCF 491
SK EYDESGPSIVHRKCF
Sbjct: 360 SKSEYDESGPSIVHRKCF 377
Score = 153 bits (371), Expect = 1e-37
Identities = 71/83 (85%), Positives = 76/83 (91%)
Frame = +1
Query: 1 IKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEA 180
IKEKL YVALD+EQE+ TA SSSS+EK+YELPDGQVITIG ERFRCPE LFQPS +GMEA
Sbjct: 214 IKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEA 273
Query: 181 CGIHETTYNSIMKCDVDIRKDLY 249
GIHETTYNSIMKCDVDIRKDLY
Sbjct: 274 PGIHETTYNSIMKCDVDIRKDLY 296
>At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493
Actin 3 {Arabidopsis thaliana}; supported by full-length
cDNA: Ceres: 19581.
Length = 377
Score = 157 bits (381), Expect = 8e-39
Identities = 71/78 (91%), Positives = 76/78 (97%)
Frame = +3
Query: 258 VLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 437
VLSGGTTM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI
Sbjct: 300 VLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI 359
Query: 438 SKQEYDESGPSIVHRKCF 491
+K EYDESGPSIVHRKCF
Sbjct: 360 AKAEYDESGPSIVHRKCF 377
Score = 154 bits (373), Expect = 7e-38
Identities = 68/83 (81%), Positives = 77/83 (92%)
Frame = +1
Query: 1 IKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEA 180
IKEKLCY+ALD+EQE+ TA +SSS+EK+YELPDGQVITIG+ERFRCPE L+QPS +GME
Sbjct: 214 IKEKLCYIALDYEQELETAKTSSSVEKNYELPDGQVITIGSERFRCPEVLYQPSMIGMEN 273
Query: 181 CGIHETTYNSIMKCDVDIRKDLY 249
GIHETTYNSIMKCDVDIRKDLY
Sbjct: 274 AGIHETTYNSIMKCDVDIRKDLY 296
>At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496
Actin 11 {Arabidopsis thaliana}
Length = 377
Score = 157 bits (381), Expect = 8e-39
Identities = 71/78 (91%), Positives = 76/78 (97%)
Frame = +3
Query: 258 VLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 437
VLSGGTTM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI
Sbjct: 300 VLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI 359
Query: 438 SKQEYDESGPSIVHRKCF 491
+K EYDESGPSIVHRKCF
Sbjct: 360 AKAEYDESGPSIVHRKCF 377
Score = 155 bits (375), Expect = 4e-38
Identities = 70/83 (84%), Positives = 76/83 (91%)
Frame = +1
Query: 1 IKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEA 180
+KEKL Y+ALD+EQEM TA +SSS+EKSYELPDGQVITIG ERFRCPE LFQPS +GMEA
Sbjct: 214 VKEKLAYIALDYEQEMETANTSSSVEKSYELPDGQVITIGGERFRCPEVLFQPSLVGMEA 273
Query: 181 CGIHETTYNSIMKCDVDIRKDLY 249
GIHETTYNSIMKCDVDIRKDLY
Sbjct: 274 AGIHETTYNSIMKCDVDIRKDLY 296
>At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671
Actin 1 (Actin 3) {Arabidopsis thaliana}
Length = 377
Score = 157 bits (381), Expect = 8e-39
Identities = 71/78 (91%), Positives = 76/78 (97%)
Frame = +3
Query: 258 VLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 437
VLSGGTTM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI
Sbjct: 300 VLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI 359
Query: 438 SKQEYDESGPSIVHRKCF 491
+K EYDESGPSIVHRKCF
Sbjct: 360 AKAEYDESGPSIVHRKCF 377
Score = 154 bits (373), Expect = 7e-38
Identities = 68/83 (81%), Positives = 77/83 (92%)
Frame = +1
Query: 1 IKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEA 180
IKEKLCY+ALD+EQE+ TA +SSS+EK+YELPDGQVITIG+ERFRCPE L+QPS +GME
Sbjct: 214 IKEKLCYIALDYEQELETAKTSSSVEKNYELPDGQVITIGSERFRCPEVLYQPSMIGMEN 273
Query: 181 CGIHETTYNSIMKCDVDIRKDLY 249
GIHETTYNSIMKCDVDIRKDLY
Sbjct: 274 AGIHETTYNSIMKCDVDIRKDLY 296
>At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 377
Score = 152 bits (369), Expect = 2e-37
Identities = 69/83 (83%), Positives = 77/83 (92%)
Frame = +1
Query: 1 IKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEA 180
IKEKL +VA+D+EQEM T+ +SSS+EK+YELPDGQVITIG ERFRCPE LFQPSF+GMEA
Sbjct: 214 IKEKLSFVAVDYEQEMETSKTSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSFVGMEA 273
Query: 181 CGIHETTYNSIMKCDVDIRKDLY 249
GIHETTYNSIMKCDVDIRKDLY
Sbjct: 274 AGIHETTYNSIMKCDVDIRKDLY 296
Score = 152 bits (369), Expect = 2e-37
Identities = 69/78 (88%), Positives = 74/78 (94%)
Frame = +3
Query: 258 VLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 437
VLSGGTTM+ GIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI
Sbjct: 300 VLSGGTTMFSGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI 359
Query: 438 SKQEYDESGPSIVHRKCF 491
SK EYDE+GP IVHRKCF
Sbjct: 360 SKAEYDEAGPGIVHRKCF 377
>At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 371
Score = 152 bits (369), Expect = 2e-37
Identities = 69/83 (83%), Positives = 77/83 (92%)
Frame = +1
Query: 1 IKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEA 180
IKEKL +VA+D+EQEM T+ +SSS+EK+YELPDGQVITIG ERFRCPE LFQPSF+GMEA
Sbjct: 214 IKEKLSFVAVDYEQEMETSKTSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSFVGMEA 273
Query: 181 CGIHETTYNSIMKCDVDIRKDLY 249
GIHETTYNSIMKCDVDIRKDLY
Sbjct: 274 AGIHETTYNSIMKCDVDIRKDLY 296
Score = 111 bits (266), Expect = 6e-25
Identities = 52/62 (83%), Positives = 58/62 (93%)
Frame = +3
Query: 258 VLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 437
VLSGGTTM+ GIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQ+ I
Sbjct: 300 VLSGGTTMFSGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQVKI 359
Query: 438 SK 443
+
Sbjct: 360 DQ 361
>At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293
Actin 8 {Arabidopsis thaliana}; nearly identical to
SP|Q96292 Actin 2 [Arabidopsis thaliana] GI:1669387, and
to At3g18780
Length = 377
Score = 152 bits (369), Expect = 2e-37
Identities = 69/83 (83%), Positives = 77/83 (92%)
Frame = +1
Query: 1 IKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEA 180
IKEKL +VA+D+EQEM T+ +SSS+EK+YELPDGQVITIG ERFRCPE LFQPSF+GMEA
Sbjct: 214 IKEKLSFVAVDYEQEMETSKTSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSFVGMEA 273
Query: 181 CGIHETTYNSIMKCDVDIRKDLY 249
GIHETTYNSIMKCDVDIRKDLY
Sbjct: 274 AGIHETTYNSIMKCDVDIRKDLY 296
Score = 152 bits (369), Expect = 2e-37
Identities = 69/78 (88%), Positives = 74/78 (94%)
Frame = +3
Query: 258 VLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 437
VLSGGTTM+ GIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI
Sbjct: 300 VLSGGTTMFSGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI 359
Query: 438 SKQEYDESGPSIVHRKCF 491
SK EYDE+GP IVHRKCF
Sbjct: 360 SKAEYDEAGPGIVHRKCF 377
>At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494
Actin 4 {Arabidopsis thaliana}
Length = 377
Score = 152 bits (368), Expect = 3e-37
Identities = 69/78 (88%), Positives = 74/78 (94%)
Frame = +3
Query: 258 VLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 437
VLSGGTTM+ GI DRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI
Sbjct: 300 VLSGGTTMFGGIGDRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI 359
Query: 438 SKQEYDESGPSIVHRKCF 491
+K EYDESGPSIVHRKCF
Sbjct: 360 AKAEYDESGPSIVHRKCF 377
Score = 147 bits (356), Expect = 8e-36
Identities = 67/83 (80%), Positives = 75/83 (90%)
Frame = +1
Query: 1 IKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEA 180
+KEKL Y+ALDFEQE+ T+ +SSS+EKS+ELPDGQVITIG ERFRCPE LFQPS +GME
Sbjct: 214 MKEKLSYIALDFEQELETSKTSSSVEKSFELPDGQVITIGAERFRCPEVLFQPSMIGMEN 273
Query: 181 CGIHETTYNSIMKCDVDIRKDLY 249
GIHETTYNSIMKCDVDIRKDLY
Sbjct: 274 PGIHETTYNSIMKCDVDIRKDLY 296
>At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497
Actin 12 {Arabidopsis thaliana}
Length = 377
Score = 152 bits (368), Expect = 3e-37
Identities = 69/78 (88%), Positives = 74/78 (94%)
Frame = +3
Query: 258 VLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 437
VLSGGTTM+ GI DRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI
Sbjct: 300 VLSGGTTMFGGIGDRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI 359
Query: 438 SKQEYDESGPSIVHRKCF 491
+K EYDESGPSIVHRKCF
Sbjct: 360 AKAEYDESGPSIVHRKCF 377
Score = 146 bits (353), Expect = 2e-35
Identities = 66/83 (79%), Positives = 75/83 (90%)
Frame = +1
Query: 1 IKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEA 180
+KEKL Y+ALD+EQE+ T+ +SSS+EKS+ELPDGQVITIG ERFRCPE LFQPS +GME
Sbjct: 214 MKEKLSYIALDYEQELETSKTSSSVEKSFELPDGQVITIGAERFRCPEVLFQPSMIGMEN 273
Query: 181 CGIHETTYNSIMKCDVDIRKDLY 249
GIHETTYNSIMKCDVDIRKDLY
Sbjct: 274 PGIHETTYNSIMKCDVDIRKDLY 296
>At2g42100.1 68415.m05205 actin, putative very strong similarity to
SP|P53496 Actin 11 {Arabidopsis thaliana}, SP|P53493
Actin 3 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 378
Score = 146 bits (353), Expect = 2e-35
Identities = 64/83 (77%), Positives = 74/83 (89%)
Frame = +1
Query: 1 IKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEA 180
IKEKLCY+A+D+EQEM A +SS+++++YELPDGQVITIG ERFRCPE LFQ S +GME
Sbjct: 215 IKEKLCYIAVDYEQEMEKATTSSAIDRTYELPDGQVITIGAERFRCPEVLFQTSLIGMET 274
Query: 181 CGIHETTYNSIMKCDVDIRKDLY 249
GIHETTYNSIMKCDVDIRKDLY
Sbjct: 275 SGIHETTYNSIMKCDVDIRKDLY 297
Score = 140 bits (338), Expect = 1e-33
Identities = 62/78 (79%), Positives = 70/78 (89%)
Frame = +3
Query: 258 VLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 437
VLSGGTTM+PGIADRM KEI ALAP +MKIK++APPERKYSVW+GGSILASLS+F MWI
Sbjct: 301 VLSGGTTMFPGIADRMNKEINALAPPSMKIKVVAPPERKYSVWVGGSILASLSSFAPMWI 360
Query: 438 SKQEYDESGPSIVHRKCF 491
+K EYDE G +IVHRKCF
Sbjct: 361 TKAEYDEQGGAIVHRKCF 378
>At2g42170.1 68415.m05219 actin, putative similar to actin 2
[Arabidopsis thaliana] gi|9293903|dbj|BAB01806
Length = 329
Score = 136 bits (330), Expect = 1e-32
Identities = 61/83 (73%), Positives = 70/83 (84%)
Frame = +1
Query: 1 IKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEA 180
IKE+ Y+ALD+EQEM A SS+++++YELPDGQVITIG ERFRCPE LFQPS +GME
Sbjct: 166 IKEQFGYIALDYEQEMEKATKSSAIDRTYELPDGQVITIGAERFRCPEVLFQPSLIGMET 225
Query: 181 CGIHETTYNSIMKCDVDIRKDLY 249
GIHE TYNSIMKCD DIRKDLY
Sbjct: 226 SGIHEKTYNSIMKCDDDIRKDLY 248
Score = 133 bits (321), Expect = 1e-31
Identities = 59/78 (75%), Positives = 70/78 (89%)
Frame = +3
Query: 258 VLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 437
VLSGGTTM+ GI +RM KEI ALA + M+IKI+APPERKYSVWIGGSILASLST++QMWI
Sbjct: 252 VLSGGTTMFRGIEERMTKEINALAAANMRIKIVAPPERKYSVWIGGSILASLSTYEQMWI 311
Query: 438 SKQEYDESGPSIVHRKCF 491
+K EY+E+GP+IVH KCF
Sbjct: 312 TKAEYEENGPAIVHTKCF 329
>At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Actin
11 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 366
Score = 118 bits (285), Expect = 3e-27
Identities = 53/83 (63%), Positives = 63/83 (75%)
Frame = +1
Query: 1 IKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEA 180
IKEKLCYVALD+EQEM +++K+Y LPDGQ ITI ERF CPE LFQPS +G E+
Sbjct: 203 IKEKLCYVALDYEQEMEKTTKGWTIDKTYVLPDGQEITIEAERFMCPEVLFQPSVIGKES 262
Query: 181 CGIHETTYNSIMKCDVDIRKDLY 249
GIHE T NSI+KC VD R+D+Y
Sbjct: 263 SGIHEATRNSILKCPVDTRRDMY 285
Score = 118 bits (285), Expect = 3e-27
Identities = 51/77 (66%), Positives = 64/77 (83%)
Frame = +3
Query: 258 VLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 437
+++GGTTM GI +RM KE+ AL PS+MK+K++ PPE + SVWIGGSILASLSTF QMWI
Sbjct: 289 LMTGGTTMLHGIKERMTKELNALVPSSMKVKVVVPPESECSVWIGGSILASLSTFHQMWI 348
Query: 438 SKQEYDESGPSIVHRKC 488
+K EY+E G +IVHRKC
Sbjct: 349 TKDEYEEHGAAIVHRKC 365
>At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary
identical to actin-related protein 4 (ARP4) [Arabidopsis
thaliana] GI:21427463; contains Pfam profile PF00022:
Actin; supporting cDNA gi|21427462|gb|AF507912.1|
Length = 441
Score = 88.2 bits (209), Expect = 5e-18
Identities = 39/85 (45%), Positives = 59/85 (69%), Gaps = 3/85 (3%)
Frame = +3
Query: 243 LVRQTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP---PERKYSVWIGGSILASL 413
L +L+GGT+ + +R++K++ +P + ++K++A ER++SVWIGGSILASL
Sbjct: 356 LYSSILLAGGTSSMQQLKERLEKDLIEESPHSARVKVLASGNTTERRFSVWIGGSILASL 415
Query: 414 STFQQMWISKQEYDESGPSIVHRKC 488
+FQQMW SK EY+E G S + RKC
Sbjct: 416 GSFQQMWFSKSEYEEHGASYIQRKC 440
Score = 57.2 bits (132), Expect = 1e-08
Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 12/69 (17%)
Frame = +1
Query: 82 SYELPDGQVITIGNERFRCPEALFQPSFL----GME--------ACGIHETTYNSIMKCD 225
SYELPDGQ + IG +RF+ P+ +F PS + GME G+ SI KCD
Sbjct: 290 SYELPDGQTLEIGADRFKVPDVMFNPSIVQTIPGMEKYAEMIPSVRGLPHMVMESINKCD 349
Query: 226 VDIRKDLYA 252
VDIR++LY+
Sbjct: 350 VDIRRELYS 358
>At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly
identical to actin-related protein 2 (ARP2) [Arabidopsis
thaliana] GI:3818624; contains Pfam profile PF00022:
Actin
Length = 389
Score = 83.4 bits (197), Expect = 1e-16
Identities = 36/83 (43%), Positives = 54/83 (65%)
Frame = +1
Query: 1 IKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEA 180
IKEKLCY++ D+++E ++ L K+Y LPDG+VI +G ERF+ PEALF P + +E
Sbjct: 213 IKEKLCYISYDYKRESQLGLETTILVKNYTLPDGRVIKVGTERFQAPEALFTPELIDVEG 272
Query: 181 CGIHETTYNSIMKCDVDIRKDLY 249
G+ + + I + D+D R LY
Sbjct: 273 DGMADMVFRCIQEMDIDNRMMLY 295
Score = 60.1 bits (139), Expect = 2e-09
Identities = 32/92 (34%), Positives = 57/92 (61%), Gaps = 12/92 (13%)
Frame = +3
Query: 243 LVRQTVLSGGTTMYPGIADRMQKEI------TALAPS-----TMKIKIIAPPERKYSVWI 389
L + VLSGG+TMYPG+ R++KEI T L + ++++I PP RK+ V++
Sbjct: 294 LYQHIVLSGGSTMYPGLPSRLEKEIQDRYLDTVLKGNKDGLKKLRLRIEDPPRRKHMVYL 353
Query: 390 GGSILAS-LSTFQQMWISKQEYDESGPSIVHR 482
GG++LA + + WI++++Y E G + +++
Sbjct: 354 GGAVLAGIMKDAPEFWINREDYMEEGINCLNK 385
>At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identical
to actin-related protein 7 (ARP7) [Arabidopsis thaliana]
GI:21427469; contains Pfam profile PF00022: Actin
Length = 363
Score = 79.0 bits (186), Expect = 3e-15
Identities = 40/89 (44%), Positives = 53/89 (59%), Gaps = 6/89 (6%)
Frame = +3
Query: 243 LVRQTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERK------YSVWIGGSIL 404
L+ TVL GGTT G R QKE L S ++ ++ PPE YS W+GG+IL
Sbjct: 276 LLENTVLCGGTTSMTGFESRFQKEAN-LCSSAIRPTLVKPPEYMPENLGMYSAWVGGAIL 334
Query: 405 ASLSTFQQMWISKQEYDESGPSIVHRKCF 491
A + Q ++K +YDE+GPS+VHRKCF
Sbjct: 335 AKVVFPQNQHVTKADYDETGPSVVHRKCF 363
Score = 54.0 bits (124), Expect = 1e-07
Identities = 27/53 (50%), Positives = 35/53 (66%)
Frame = +1
Query: 37 EQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHE 195
E E+A + + + + LPDGQVI+IG ER+ EALFQPS LG+E GI E
Sbjct: 207 EDEIAYKKTQNCEIEQHTLPDGQVISIGRERYSVGEALFQPSILGLEEHGIVE 259
>At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly
identical to actin-related protein 6 (ARP6) [Arabidopsis
thaliana] GI:21427467; contains Pfam profile PF00022:
Actin
Length = 421
Score = 66.1 bits (154), Expect = 2e-11
Identities = 29/83 (34%), Positives = 49/83 (59%)
Frame = +3
Query: 243 LVRQTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 422
L + +L+GG+T++P + +R++ E+ L P +KI + VW GGS+LAS F
Sbjct: 338 LYQSIILTGGSTLFPQLKERLEGELRPLVPDHFDVKITTQEDPILGVWRGGSLLASSPDF 397
Query: 423 QQMWISKQEYDESGPSIVHRKCF 491
+ M ++K EY+E G + R+ F
Sbjct: 398 ESMCVTKAEYEELGSARCRRRFF 420
Score = 41.1 bits (92), Expect(2) = 5e-09
Identities = 20/47 (42%), Positives = 26/47 (55%)
Frame = +1
Query: 109 ITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLY 249
I + NERF PE LFQP+ LGM G+ E +I C ++ LY
Sbjct: 293 IDLTNERFLVPETLFQPADLGMNQAGLAECIVRAINSCHSYLQPVLY 339
Score = 37.1 bits (82), Expect(2) = 5e-09
Identities = 19/40 (47%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Frame = +1
Query: 4 KEKLCYVALDFEQEMATAASSSSLEKS-YELPDGQVITIG 120
KEKLC+V+LD +++ A + ++L KS Y LPDG T G
Sbjct: 215 KEKLCFVSLDLLRDLRLARNGNTLIKSTYVLPDGVTHTKG 254
>At5g56180.1 68418.m07008 actin-related protein, putative (ARP8)
strong similarity to actin-related protein 8A (ARP8)
[Arabidopsis thaliana] GI:21427473; contains Pfam
profile PF00022: Actin; supporting cDNA
gi|21427470|gb|AF507916.1|
Length = 471
Score = 55.2 bits (127), Expect = 5e-08
Identities = 29/75 (38%), Positives = 40/75 (53%)
Frame = +1
Query: 1 IKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEA 180
+KEKLCYVALD++ E+ S + S E+ T+ ERF+ E LFQP GM A
Sbjct: 312 LKEKLCYVALDYKAEL-----SKDTQASVEVSGEGWFTLSKERFQTGEILFQPRLAGMRA 366
Query: 181 CGIHETTYNSIMKCD 225
+H+ + CD
Sbjct: 367 MSLHQAVSLCMDHCD 381
Score = 47.2 bits (107), Expect = 1e-05
Identities = 21/71 (29%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Frame = +3
Query: 249 RQTVLSGGTTMYPGIADRMQKEITALAPSTMK--IKIIAPPERKYSVWIGGSILASLSTF 422
+ VL+GG+ PG+++R+++E+ PS++ I++I PP + W G ++++LS F
Sbjct: 393 KTVVLTGGSACLPGLSERLERELQDHLPSSISNGIRVIPPPYGVDTSWHGAKLISNLSIF 452
Query: 423 QQMW-ISKQEY 452
W I+++++
Sbjct: 453 PGPWCITRKQF 463
>At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identical
to actin-related protein 3 (ARP3) [Arabidopsis thaliana]
GI:21427461; contains Pfam profile PF00022: Actin
Length = 427
Score = 48.4 bits (110), Expect = 5e-06
Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 16/93 (17%)
Frame = +3
Query: 243 LVRQTVLSGGTTMYPGIADRMQKEITALAPSTM----------------KIKIIAPPERK 374
L + VLSGG+TM+ R+Q+++ + + + ++ +++ P ++
Sbjct: 324 LYKNIVLSGGSTMFKDFGRRLQRDLKKIVDARVLANNARTGGEITSQPVEVNVVSHPVQR 383
Query: 375 YSVWIGGSILASLSTFQQMWISKQEYDESGPSI 473
++VW GGS+L+S F +K+EY+E G SI
Sbjct: 384 FAVWFGGSVLSSTPEFFASCRTKEEYEEYGASI 416
>At5g56180.2 68418.m07009 actin-related protein, putative (ARP8)
strong similarity to actin-related protein 8A (ARP8)
[Arabidopsis thaliana] GI:21427473; contains Pfam
profile PF00022: Actin; supporting cDNA
gi|21427470|gb|AF507916.1|
Length = 387
Score = 45.2 bits (102), Expect = 5e-05
Identities = 24/58 (41%), Positives = 33/58 (56%)
Frame = +1
Query: 1 IKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGM 174
+KEKLCYVALD++ E+ S + S E+ T+ ERF+ E LFQP G+
Sbjct: 312 LKEKLCYVALDYKAEL-----SKDTQASVEVSGEGWFTLSKERFQTGEILFQPRLAGI 364
>At3g12380.1 68416.m01543 actin/actin-like family protein similar to
SP|P53946 Actin-like protein ARP5 {Saccharomyces
cerevisiae}; contains Pfam profile PF00022: Actin
Length = 724
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/41 (46%), Positives = 25/41 (60%)
Frame = +1
Query: 109 ITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVD 231
I IG ERFRCPE LF P+ +G++ G+ E SI + D
Sbjct: 589 IVIGIERFRCPEILFHPNLIGIDQVGLDEMAGTSIRRLPHD 629
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/74 (25%), Positives = 35/74 (47%)
Frame = +3
Query: 243 LVRQTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 422
L +++GG ++ PG+ +R++ I + P I ++ + W G S A+ F
Sbjct: 637 LTSSILMTGGCSLLPGMNERLECGIRMIRPCGSPINVVRAMDPVLDAWRGASAFAANLNF 696
Query: 423 QQMWISKQEYDESG 464
+K +YDE G
Sbjct: 697 LGNAFTKMDYDEKG 710
>At5g43500.2 68418.m05318 expressed protein
Length = 584
Score = 31.5 bits (68), Expect = 0.64
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = +3
Query: 261 LSGGTTMYPGIADRMQKEITALAPSTMKIKII----APPERKYSVWIGGSILASLSTFQQ 428
L GG + G+ +++ + P T I + + E ++ W GG+IL L ++
Sbjct: 488 LIGGAGLTKGLVAAVEERVLHAIPPTEAIDTVQVLPSRTEPQFVTWKGGAILGILDFGRE 547
Query: 429 MWISKQEYDESG 464
WI + ++ +G
Sbjct: 548 AWIERHQWMVNG 559
>At5g43500.1 68418.m05319 expressed protein
Length = 596
Score = 31.5 bits (68), Expect = 0.64
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = +3
Query: 261 LSGGTTMYPGIADRMQKEITALAPSTMKIKII----APPERKYSVWIGGSILASLSTFQQ 428
L GG + G+ +++ + P T I + + E ++ W GG+IL L ++
Sbjct: 500 LIGGAGLTKGLVAAVEERVLHAIPPTEAIDTVQVLPSRTEPQFVTWKGGAILGILDFGRE 559
Query: 429 MWISKQEYDESG 464
WI + ++ +G
Sbjct: 560 AWIERHQWMVNG 571
>At4g30340.1 68417.m04312 diacylglycerol kinase family protein
contains INTERPRO domain, IPR001206, DAG-kinase
catalytic domain
Length = 374
Score = 31.5 bits (68), Expect = 0.64
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -2
Query: 386 PYGVLPLWRSNDLNLHCRWGESCDFLLHTVGDSRVHGGTTG 264
P GV+PL NDL+ WG S F + +H T G
Sbjct: 192 PVGVIPLGTGNDLSRSFSWGGSFPFAWRSAMKRTLHRATLG 232
>At1g63540.1 68414.m07183 hydroxyproline-rich glycoprotein family
protein
Length = 635
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/72 (29%), Positives = 37/72 (51%)
Frame = +2
Query: 11 SCATSLLTSSRKWPPLHPAAPSRSLTNFPTVRSSLSETKDSVAQRLSSNPRSWVWKLAAS 190
S A++ TSS PLH ++P +F + ++++ AQ +S+PR W+ + A S
Sbjct: 126 SGASATSTSSTS-SPLHSSSPF----SFGSAPAAITSVSSGPAQSPASSPRLWIDRFATS 180
Query: 191 TRPHITPS*SAT 226
+ T S S +
Sbjct: 181 SSASATSSSSTS 192
>At1g18280.1 68414.m02282 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to lipid
transfer protein GI:2627141 from (Picea abies); contains
Pfam profile PF00234 Protease inhibitor/seed storage/LTP
family
Length = 180
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/49 (36%), Positives = 21/49 (42%)
Frame = +2
Query: 14 CATSLLTSSRKWPPLHPAAPSRSLTNFPTVRSSLSETKDSVAQRLSSNP 160
C TS T+S PP P P S T+ T S S A+ SS P
Sbjct: 113 CKTSAGTNSSSTPPATPKTPPASSTSTGTGSGSTGNAAPSTAKPTSSAP 161
>At1g69270.1 68414.m07941 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 540
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -2
Query: 389 DPYGVLPLWRSNDLNLHCRW-GESCD 315
DP GVL W S+ + HC W G SC+
Sbjct: 45 DPNGVLSSWVSDSSSNHCSWYGVSCN 70
>At1g20950.1 68414.m02623 pyrophosphate--fructose-6-phosphate
1-phosphotransferase-related / pyrophosphate-dependent
6-phosphofructose-1-kinase-related similar to
pyrophosphate--fructose 6-phosphate 1-phosphotransferase
alpha subunit SP:Q41140 from [Ricinus communis]
Length = 614
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = -2
Query: 332 WGESCDFLLHTVGDSRVHGGTTGQYGLAYKSLRMSTSHFMME 207
W + + L ++G +H G AY LR + F+ME
Sbjct: 493 WSQDASYTLTSIGRPAIHPAMVDLKGKAYDLLRQNAQKFLME 534
>At5g46330.1 68418.m05703 leucine-rich repeat transmembrane protein
kinase, putative
Length = 1173
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = -2
Query: 395 STDPYGVLPLWRSNDLNLHCRW-GESCDFLLHTVGDS 288
S DP GVL W HC W G +CD H V S
Sbjct: 42 SNDPLGVLSDWTIIGSLRHCNWTGITCDSTGHVVSVS 78
>At3g14720.1 68416.m01861 mitogen-activated protein kinase, putative
/ MAPK, putative (MPK19) identical to mitogen-activated
protein kinase (MAPK)(AtMPK19), PMID:12119167;
Length = 586
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/58 (24%), Positives = 28/58 (48%)
Frame = +3
Query: 207 LHHEVRRGHP*GLVRQTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYS 380
++ E+ HP L G + +YP ++K+ L ++ K + PP+RK++
Sbjct: 340 IYREILEYHPQLLKDYMNSEGSSFLYPSAIGHLRKQFAYLEENSGKSGPVIPPDRKHA 397
>At2g18730.1 68415.m02181 diacylglycerol kinase, putative contains
INTERPRO domain, IPR001206, DAG-kinase catalytic domain
Length = 488
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -2
Query: 386 PYGVLPLWRSNDLNLHCRWGESCDFLLHTVGDSRVHGGTTG 264
P GV+PL NDL+ WG S F + +H + G
Sbjct: 189 PVGVIPLGTGNDLSRSFGWGGSFPFAWRSAVKRTLHRASMG 229
>At4g24175.1 68417.m03469 expressed protein
Length = 306
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
Frame = +3
Query: 66 QLPREVLRTSRRSGHHYRK------RKIPLPRGSLPTLVL 167
QL R + + S + HH+R +K+P P S+PTL+L
Sbjct: 3 QLIRPIRQLSPQCNHHFRNLRYLFSKKLPNPPSSIPTLLL 42
>At4g00750.1 68417.m00102 dehydration-responsive family protein
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 633
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +2
Query: 350 DHCSSREEVLRMDRWIDPRLPLYLPTDVDLETGVRRV 460
D C + +L MDR + P+ + + D+D+ T V+++
Sbjct: 555 DRCDMEDILLEMDRILRPKGSVIIRDDIDVLTKVKKI 591
>At2g39440.1 68415.m04841 expressed protein
Length = 773
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -2
Query: 440 RDP-HLLEGREGGEDRSTDPYGVLPLWRSNDLNLHCRWGESCD 315
R+P G E GEDR DP + + R NDL + + + D
Sbjct: 39 REPGEFAAGMEEGEDRPIDPISDIDITRINDLMFNSNFRAAAD 81
>At5g61010.1 68418.m07653 exocyst subunit EXO70 family protein
leucine zipper-containing protein, tomato, PIR:S21495;
contains Pfam domain PF03081: Exo70 exocyst complex
subunit; similar to rexo70 (GI:2827160) {Rattus
norvegicus}
Length = 639
Score = 28.3 bits (60), Expect = 5.9
Identities = 20/77 (25%), Positives = 37/77 (48%)
Frame = +2
Query: 8 RSCATSLLTSSRKWPPLHPAAPSRSLTNFPTVRSSLSETKDSVAQRLSSNPRSWVWKLAA 187
RS T+L +S + L+ +S+ R + + K S +RL + W+ K A
Sbjct: 461 RSIVTTLESSLERKAQLYADEALKSIFLMNNFRYMVQKVKGSELRRLFGD--EWIRKHIA 518
Query: 188 STRPHITPS*SATWTSV 238
S + ++T +TW+S+
Sbjct: 519 SYQCNVTNYERSTWSSI 535
>At2g42760.1 68415.m05295 expressed protein
Length = 267
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +2
Query: 311 GNHSSRPIDNED*DHCSSREEVLRMDRWIDPRLPL-YLPTDVDLETGVRRVW 463
GN ++RP +E DHC R+ ++ I R+P ++VDL+ + R+W
Sbjct: 207 GNRAARPYLSEAWDHCGGRKGKKQITPEIKWRVPAPAAASEVDLKDNL-RLW 257
>At5g60050.1 68418.m07530 PRLI-interacting factor-related contains
weak similarity to PRLI-interacting factor G
(GI:11139264) [Arabidopsis thaliana]
Length = 499
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +2
Query: 2 SRRSCATSLLTSSRKWPPLHPAAPSRSLTNFPTVRSSLSETKDSVAQRLSSNPR 163
SR S L T+S PP P P+ S + PT+ +S+ + R S+ R
Sbjct: 25 SRISSPIKLSTASPPLPPPPPPPPNESTLSNPTLFDMMSDEHNRELPRRKSHAR 78
>At4g19110.1 68417.m02819 protein kinase, putative contains protein
kinase domain, Pfam:PF00069
Length = 461
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 23 SLLTSSRKWPPLHPAAPSRSLTNFPTVRSSLSETKDSVA 139
S + S+ PP + P+ SL RSS+SET D +A
Sbjct: 366 SSVRDSKYRPPGKKSPPAASLNKNRVTRSSVSETADKLA 404
>At2g33780.1 68415.m04143 VQ motif-containing protein contains
PF05678: VQ motif
Length = 204
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 44 KWPPLHPAAPSRSLTNFPTVRS-SLSETKDSVAQRLSSNP 160
++PP H P +++TN S LSE ++S+ L+ NP
Sbjct: 67 RFPPFHSIPPIKAVTNKKQSSSFRLSERRNSMKHYLNINP 106
>At1g63930.1 68414.m07238 expressed protein ; expression supported
by MPSS
Length = 415
Score = 27.9 bits (59), Expect = 7.8
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Frame = -3
Query: 352 ILIFIVDGARAVISFCIRSAIPGYMVVPPDNTVWRTSPYGCPRRT-S*WSYMWSRGCRKL 176
+++F++ A + RS + ++ VPP + W S G + W +G L
Sbjct: 269 VMVFVMWVLTAAVPCQERSGLANHLPVPPKHLNWAQSLIGIHEKIGDEWKKKEKKGSAGL 328
Query: 175 PYPRTRVGREPLGNGIFRF 119
TR+ E LG+ + F
Sbjct: 329 MEEMTRM--EKLGHSLMEF 345
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,164,206
Number of Sequences: 28952
Number of extensions: 390337
Number of successful extensions: 1295
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 1217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1289
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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