Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30852
(524 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces pomb... 54 1e-08
SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom... 54 2e-08
SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar... 54 2e-08
SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces pom... 50 2e-07
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb... 42 6e-05
SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces pom... 40 2e-04
SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces po... 40 2e-04
SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces po... 40 2e-04
SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces ... 39 4e-04
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ... 35 0.009
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 25 5.2
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|... 25 6.9
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 25 6.9
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 25 6.9
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 25 9.1
>SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 247
Score = 54.0 bits (124), Expect = 1e-08
Identities = 33/78 (42%), Positives = 41/78 (52%)
Frame = +3
Query: 15 AIPHLIKTKGNIVNVSSVTGLRSFPNVLAYCISKSAIDQFTRCVALEVALKGVRVNAVNP 194
AIPHL KTKG IV VSS +R FP AYC SK+AI+ + E + AV P
Sbjct: 121 AIPHLRKTKGTIVIVSSGAAVRVFPAWAAYCCSKAAINMLVMNLGSEE--PDIMSVAVRP 178
Query: 195 GVIATGLHKKGEGSMNEE 248
GV+ T + N+E
Sbjct: 179 GVVDTPMQVSIRNDSNKE 196
>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 53.6 bits (123), Expect = 2e-08
Identities = 31/71 (43%), Positives = 43/71 (60%)
Frame = +3
Query: 3 LTMLAIPHLIKTKGNIVNVSSVTGLRSFPNVLAYCISKSAIDQFTRCVALEVALKGVRVN 182
+T AI H+ K+ +IVN SS+ P++L Y +K AI FTR ++ + A G+RVN
Sbjct: 160 VTKAAISHM-KSGSSIVNCSSINAYVGRPDLLDYTSTKGAITAFTRGLSNQYAQHGIRVN 218
Query: 183 AVNPGVIATGL 215
AV PG I T L
Sbjct: 219 AVAPGPIYTPL 229
Score = 31.1 bits (67), Expect = 0.11
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +2
Query: 290 LGRPGDAKEVSSVIVFLASDAASNITGATLPVDGG 394
LGR G EV+S +FLA +TG TL +GG
Sbjct: 247 LGRMGQPVEVASCYLFLACSDGGYMTGQTLHPNGG 281
>SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 236
Score = 53.6 bits (123), Expect = 2e-08
Identities = 23/54 (42%), Positives = 35/54 (64%)
Frame = +3
Query: 48 IVNVSSVTGLRSFPNVLAYCISKSAIDQFTRCVALEVALKGVRVNAVNPGVIAT 209
I+N+SS + P Y SK+ ++ FT+ +A EVA KG+RVNA++PG + T
Sbjct: 133 ILNISSRLSTYALPGTSVYAASKAGLESFTKVLAAEVASKGIRVNAISPGYVDT 186
>SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 259
Score = 50.4 bits (115), Expect = 2e-07
Identities = 23/59 (38%), Positives = 35/59 (59%)
Frame = +3
Query: 33 KTKGNIVNVSSVTGLRSFPNVLAYCISKSAIDQFTRCVALEVALKGVRVNAVNPGVIAT 209
K KG+I+NV S+ G S+ YC +KSA+ QFT + E +R+ V+PG++ T
Sbjct: 135 KNKGDILNVGSIAGRESYVGGSVYCSTKSALAQFTSALRKETIDTRIRIMEVDPGLVET 193
>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 41.9 bits (94), Expect = 6e-05
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +3
Query: 18 IPHLIKTK--GNIVNVSSVTGLRSFPNVLAYCISKSAIDQFTRCVALEVALKGVRVNAVN 191
IPH+ K G+IVN+ SV G + AY +K+ ++ T+ +A+ G+RVN
Sbjct: 116 IPHMAKQGKGGSIVNIGSVNG-HIYLGSPAYSAAKAGLENLTKALAVRYGPLGIRVNVCA 174
Query: 192 PGVI 203
PG I
Sbjct: 175 PGTI 178
Score = 37.1 bits (82), Expect = 0.002
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +2
Query: 284 HALGRPGDAKEVSSVIVFLASDAASNITGATLPVDGG 394
+ +GR G ++V+ ++FLA S ITG TL VDGG
Sbjct: 201 YPVGRLGTPEDVARAVIFLADSKNSFITGTTLYVDGG 237
>SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 236
Score = 40.3 bits (90), Expect = 2e-04
Identities = 21/56 (37%), Positives = 31/56 (55%)
Frame = +3
Query: 42 GNIVNVSSVTGLRSFPNVLAYCISKSAIDQFTRCVALEVALKGVRVNAVNPGVIAT 209
G I+NVSS+ G +FP Y +K AI+ + + E+ GV+V + PG AT
Sbjct: 94 GMIINVSSIGGKMTFPLGCLYYGTKYAIEGISEALTWEMQSIGVKVKIIEPGFTAT 149
>SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 236
Score = 40.3 bits (90), Expect = 2e-04
Identities = 21/56 (37%), Positives = 31/56 (55%)
Frame = +3
Query: 42 GNIVNVSSVTGLRSFPNVLAYCISKSAIDQFTRCVALEVALKGVRVNAVNPGVIAT 209
G I+NVSS+ G +FP Y +K AI+ + + E+ GV+V + PG AT
Sbjct: 94 GMIINVSSIGGKMTFPLGCLYYGTKYAIEGISEALTWEMQSIGVKVKIIEPGFTAT 149
>SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 261
Score = 40.3 bits (90), Expect = 2e-04
Identities = 20/60 (33%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Frame = +3
Query: 42 GNIVNVSSVTG--LRSFPNVLAYCISKSAIDQFTRCVALEVALKGVRVNAVNPGVIATGL 215
GN++ +S++ + + ++ AYC SK+A+ Q + +A+E A + R+N+V+PG AT +
Sbjct: 150 GNLIATASMSATIVNAPQHIAAYCASKAAVRQLCKALAVEWA-EFARINSVSPGYFATDM 208
Score = 30.3 bits (65), Expect = 0.18
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +2
Query: 296 RPGDAKEVSSVIVFLASDAASNITGATLPVDGG 394
R G E+ ++LAS+A+S +TG L VDGG
Sbjct: 225 RLGLTPELRGTYLYLASNASSFVTGLDLIVDGG 257
>SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 261
Score = 39.1 bits (87), Expect = 4e-04
Identities = 19/33 (57%), Positives = 24/33 (72%)
Frame = +2
Query: 296 RPGDAKEVSSVIVFLASDAASNITGATLPVDGG 394
R G AKE++S ++LASDAAS +G L VDGG
Sbjct: 225 RNGLAKEIASAYLYLASDAASYASGTNLIVDGG 257
>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 255
Score = 34.7 bits (76), Expect = 0.009
Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Frame = +3
Query: 39 KGNIVNVSSVTG-LRSFPNVLA-YCISKSAIDQFTRCVALEVALKGVRVNAVNPGVIATG 212
KG+++ +S++G + ++P A Y +K+A+ R +A+E A RVN+V+PG I T
Sbjct: 140 KGSLIFTASMSGHIANWPQQWASYHATKAAVKHLARALAVEWA-PFARVNSVSPGYIDTD 198
Query: 213 L 215
L
Sbjct: 199 L 199
Score = 30.7 bits (66), Expect = 0.14
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +2
Query: 296 RPGDAKEVSSVIVFLASDAASNITGATLPVDGG 394
R G E+ ++LASDA+S TG+ + VDGG
Sbjct: 219 RIGLPDELPGAYLYLASDASSYCTGSDIIVDGG 251
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -3
Query: 393 PPSTGKVAPVMLLAASLAKKT 331
PPSTGK A M +A SL T
Sbjct: 73 PPSTGKTAIAMGMAQSLGSDT 93
>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1018
Score = 25.0 bits (52), Expect = 6.9
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = -3
Query: 378 KVAPVMLLAASLAKKTMTEDTSLASPGLPRAWVSAHFAKKAYIVLRSYFLRLFYVNQS 205
K A LAASL+ + L GL HF +K I L + + + +V +S
Sbjct: 682 KAAERFTLAASLSDQKFLNLVVLLQGGLNGLSKKLHFIEKLNIELLNLLINVVFVTES 739
>SPAPB8E5.07c |||ribosome biogenesis protein
Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1163
Score = 25.0 bits (52), Expect = 6.9
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -2
Query: 505 ALRVYSPLHLDIIK-ECLHSFKVYF 434
A+R ++ L + K ECLH FK +F
Sbjct: 304 AIRAFNILDKETAKYECLHRFKAFF 328
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1647
Score = 25.0 bits (52), Expect = 6.9
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Frame = -2
Query: 508 YALRVYSPLHLDIIKECLHS--FKVYFHCISFLSRTHGMTTSIYRQSGTSNVACSITS*E 335
+ R+ S +HL ++ H + +S+L G R + + CSI
Sbjct: 913 FMTRISSIVHLALLVGSRHKCFLRSAIEILSYLVDAEGFMNK--RNPDENKLLCSIIRTA 970
Query: 334 NDD*RYFFGIPRSAES 287
N+ R FG R+ ES
Sbjct: 971 NESKRIIFGFIRTFES 986
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 24.6 bits (51), Expect = 9.1
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -3
Query: 306 SPGLPRAWVSAHFAKKAYIVLRSY 235
+PGLP WVS+ F + Y
Sbjct: 336 TPGLPEIWVSSQFPNSTVLNEHGY 359
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,051,613
Number of Sequences: 5004
Number of extensions: 40223
Number of successful extensions: 117
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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