Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30851
(777 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924... 71 1e-12
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379... 70 2e-12
02_02_0470 - 10700092-10700505 30 2.4
10_08_0951 - 21769342-21769752 29 5.4
09_02_0616 + 11256242-11256430,11256981-11257225,11257317-11257878 29 5.4
05_07_0220 + 28482589-28483752 29 5.4
03_06_0518 - 34474776-34474865,34475168-34475437,34475536-344758... 29 5.4
02_05_0781 + 31715100-31715672 28 9.5
>02_04_0433 -
22891261-22891509,22892181-22892301,22892405-22892496,
22892692-22892755,22892855-22892920,22893102-22893193,
22893991-22894050,22894181-22894270,22894484-22894613,
22895066-22895157,22895299-22895373,22895663-22895754,
22896496-22896586,22897541-22897574,22897745-22897791,
22899110-22899209,22899300-22899436,22900837-22901015,
22901146-22901188,22901264-22901297,22901839-22901948,
22902043-22902224,22903062-22903168,22903266-22903480
Length = 833
Score = 70.9 bits (166), Expect = 1e-12
Identities = 40/81 (49%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Frame = +3
Query: 276 FYPTQE-KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLV 452
FYP + K RA S + + ++R + GTV ILLAGR+ GKRVV + L SGLLL+
Sbjct: 50 FYPADDVKPRAPSTRKA---NPTKLRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLLI 106
Query: 453 TGPFAFNSCPLRRIPQRYVSA 515
TGPF N P+RR+ Q YV A
Sbjct: 107 TGPFKINGVPIRRVNQAYVIA 127
Score = 45.2 bits (102), Expect = 6e-05
Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Frame = +2
Query: 476 VPATPYSSALCIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKE- 652
VP + A I TST++ + K+ K F+D YF EG+ +F T+KE
Sbjct: 115 VPIRRVNQAYVIATSTKVDISGVKVDK-FDDKYFARDKKAKAKKT---EGE-LFETEKEA 169
Query: 653 -KYVPSEQRKTDQKTVDEAVIKAIGARPDKKVLRG 754
K +P + +K DQK VD +IKAI PD K G
Sbjct: 170 TKNLP-DFKKDDQKAVDAELIKAIEVVPDLKSYLG 203
>04_04_0211 -
23636377-23636532,23636624-23636805,23637853-23637959,
23637997-23638280
Length = 242
Score = 69.7 bits (163), Expect = 2e-12
Identities = 40/80 (50%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Frame = +3
Query: 282 PTQEKIRASSGGRPFS--KHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVT 455
PT+ + +SS FS + + +R ++ GTV ILLAGR GKRVV + L SGLLLVT
Sbjct: 71 PTKLRSPSSSNLPEFSLFRFILLMRSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLVT 130
Query: 456 GPFAFNSCPLRRIPQRYVSA 515
GPF N P+RR+ Q YV A
Sbjct: 131 GPFKINGVPIRRVNQPYVIA 150
Score = 44.8 bits (101), Expect = 8e-05
Identities = 35/95 (36%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Frame = +2
Query: 476 VPATPYSSALCIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKE- 652
VP + I TST++ + + K F+D YF EG+ +F T+KE
Sbjct: 138 VPIRRVNQPYVIATSTKVDISGVNVEK-FDDKYFSRDKKQKAKKT---EGE-LFETEKEA 192
Query: 653 -KYVPSEQRKTDQKTVDEAVIKAIGARPDKKVLRG 754
K +P E +K DQK VD +IKAI A PD K G
Sbjct: 193 TKNLP-EFKKEDQKVVDAELIKAIEAVPDLKTYLG 226
>02_02_0470 - 10700092-10700505
Length = 137
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 357 LKIGTVCILLAGRHAGKRVVLVGILPSG 440
LK G ILL GR+AG++ V+V + G
Sbjct: 5 LKPGKAVILLQGRYAGRKAVIVRVFEEG 32
>10_08_0951 - 21769342-21769752
Length = 136
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 357 LKIGTVCILLAGRHAGKRVVLVGILPSG 440
LK G ILL GR AG++ V+V + G
Sbjct: 5 LKPGKAVILLQGRFAGRKAVIVRVFEEG 32
>09_02_0616 + 11256242-11256430,11256981-11257225,11257317-11257878
Length = 331
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3
Query: 480 PLRRIPQRYVSAPPPEFHSATSNCQNTSMMITSR 581
P +IP RY+SAPPP SAT+ + ++ +R
Sbjct: 6 PHLQIPDRYISAPPPP-ASATARASSLPVVDMAR 38
>05_07_0220 + 28482589-28483752
Length = 387
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +3
Query: 429 LPSGLLLVTGPFAFNSCPLRRIPQRYVSAPPPEFHSATSNCQNTS 563
L S LL G F C P R +S PPP ++ S+C ++S
Sbjct: 30 LSSPNLLTNGGDLFYGCYSPFSPTRVLSPPPPRRAASFSHCSSSS 74
>03_06_0518 -
34474776-34474865,34475168-34475437,34475536-34475831,
34475924-34476013,34476172-34476337,34476399-34476679,
34476881-34477217
Length = 509
Score = 28.7 bits (61), Expect = 5.4
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Frame = +3
Query: 498 QRYVSAPPPEFHSATSNCQNTSMMITSRRIRSASN----VQSNAKRVMTSLPQKKRNTFH 665
QRY S PP + S+ S I+ +RS+ + QS A +P+K RN
Sbjct: 30 QRYQSCPPEVYRRQASSYSVPSSEISRSSVRSSGSFRAAAQSLAGVFSCFVPRKSRNEDE 89
Query: 666 LSSAKPIRRQSTR 704
L ++ Q +R
Sbjct: 90 LEISRTTISQGSR 102
>02_05_0781 + 31715100-31715672
Length = 190
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +3
Query: 432 PSGLLLVTGPFAFNSCPLRRIPQRYVSAPPPEFHSATSNCQNTSMMIT 575
P+G + + P R +R+ +APPP ++TS +T+++ T
Sbjct: 41 PAGKAAAAAVVSAAAQPQRAAKKRHAAAPPPRPSASTSRRSSTTVVAT 88
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,143,773
Number of Sequences: 37544
Number of extensions: 480681
Number of successful extensions: 1236
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1236
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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