Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30851
         (777 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)               48   8e-06
SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   3.2  
SB_58298| Best HMM Match : Vicilin_N (HMM E-Value=0.48)                29   3.2  
SB_29467| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_27497| Best HMM Match : Death (HMM E-Value=0.028)                   28   9.7  
SB_7780| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.7  

>SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)
          Length = 112

 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
 Frame = +2

Query: 476 VPATPYSSALCIGTSTRISLGNFKLPKH-FNDDYFXXXXXXXXXXXXXXEGDDIFATKKE 652
           VP      +  I TST I + + KLP+H F D+ +                +D+F    E
Sbjct: 8   VPLRRIPQSYVIATSTHIDVSDVKLPEHAFADESYFKGEPKKKK-----RSEDMFEEAAE 62

Query: 653 KYVPSEQRKTDQKTVDEAVIKAIGARPDKK 742
           +  PSEQR  DQK VD+ ++  I A P+ K
Sbjct: 63  EKKPSEQRIADQKAVDDQILPKISAVPNMK 92



 Score = 30.7 bits (66), Expect = 1.4
 Identities = 13/19 (68%), Positives = 13/19 (68%)
 Frame = +3

Query: 459 PFAFNSCPLRRIPQRYVSA 515
           PF  N  PLRRIPQ YV A
Sbjct: 2   PFKINGVPLRRIPQSYVIA 20


>SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1081

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 19/64 (29%), Positives = 31/64 (48%)
 Frame = +3

Query: 552  QNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*SKPSEPD 731
            + T ++ T++ +   S+     +R   S     R   H    KP  R++T   SKP+EPD
Sbjct: 966  RQTPLVDTTKAVGPLSSTSETRRRQSDSDSVLSRRLDH---TKPPLRKTTSNDSKPTEPD 1022

Query: 732  PTRR 743
             +RR
Sbjct: 1023 SSRR 1026


>SB_58298| Best HMM Match : Vicilin_N (HMM E-Value=0.48)
          Length = 204

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 18/69 (26%), Positives = 31/69 (44%)
 Frame = +3

Query: 453 TGPFAFNSCPLRRIPQRYVSAPPPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMT 632
           T   A N+C  RR  ++   A       AT+NC+  +  +   +  +A    +N +R   
Sbjct: 92  TAEGATNNC--RRRNEQLPKAQRTTAEGATNNCRRRNEQLPKAQRTTAEGATNNCRRRNE 149

Query: 633 SLPQKKRNT 659
            LP+ +R T
Sbjct: 150 QLPKAQRTT 158



 Score = 29.5 bits (63), Expect = 3.2
 Identities = 18/69 (26%), Positives = 31/69 (44%)
 Frame = +3

Query: 453 TGPFAFNSCPLRRIPQRYVSAPPPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMT 632
           T   A N+C  RR  ++   A       AT+NC+  +  +   +  +A    +N +R   
Sbjct: 114 TAEGATNNC--RRRNEQLPKAQRTTAEGATNNCRRRNEQLPKAQRTTAEGTTNNCRRHNE 171

Query: 633 SLPQKKRNT 659
            LP+ +R T
Sbjct: 172 QLPKAQRTT 180



 Score = 28.7 bits (61), Expect = 5.5
 Identities = 19/79 (24%), Positives = 36/79 (45%)
 Frame = +3

Query: 471 NSCPLRRIPQRYVSAPPPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKK 650
           N+C  RR  ++   A       AT+NC+  +  +   +  +A    +N +R    LP+ +
Sbjct: 76  NNC--RRRNEQLPKAQRTTAEGATNNCRRRNEQLPKAQRTTAEGATNNCRRRNEQLPKAQ 133

Query: 651 RNTFHLSSAKPIRRQSTRL 707
           R T    +    RR++ +L
Sbjct: 134 RTTAE-GATNNCRRRNEQL 151


>SB_29467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +2

Query: 350 TQPEDRNCLHSPRW*TCRQEGCTCWN-SAQRSAFSYWTFCFQFVPATPYS 496
           TQ   R   HSPR   CR   CT +N    +   S+ T C +  P   +S
Sbjct: 84  TQEAYRKNSHSPRKRQCRNRLCTSYNWIRNKETSSFVTLCHREKPVGHFS 133


>SB_27497| Best HMM Match : Death (HMM E-Value=0.028)
          Length = 892

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = +1

Query: 211 VKQIGGEKNGGTRTVPSNVGSPSTPLRRKSVLHLVAVHSASMYAGSDP 354
           VK++ G     TR VP    +   P +   V  LV  HS   Y GSDP
Sbjct: 257 VKEMLGLSPFATRDVPMRNKAIKLPKKAPPVF-LVCTHSDEPYEGSDP 303


>SB_7780| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1309

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 237 WGNQNSPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKI 365
           W N    L+  K F   +E   + +  R FSKH+R++R   ++
Sbjct: 292 WKNLKKVLELEKEFTVYKELNGSDACKRVFSKHIRKLRREFEL 334


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,441,924
Number of Sequences: 59808
Number of extensions: 515458
Number of successful extensions: 1698
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1688
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)