Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30851
(777 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal prote... 66 2e-11
Z83102-9|CAI79156.1| 82|Caenorhabditis elegans Hypothetical pr... 31 0.92
AC024744-1|AAL00859.1| 685|Caenorhabditis elegans Hypothetical ... 29 2.8
Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical pr... 29 4.9
Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical pr... 29 4.9
AF043700-6|AAB97569.2| 443|Caenorhabditis elegans Hypothetical ... 29 4.9
AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein. 29 4.9
Z50740-1|CAA90607.1| 1089|Caenorhabditis elegans Hypothetical pr... 28 6.5
>U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 6 protein.
Length = 217
Score = 66.5 bits (155), Expect = 2e-11
Identities = 36/94 (38%), Positives = 49/94 (52%)
Frame = +2
Query: 479 PATPYSSALCIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKEKY 658
P A I TS ++++ K+P+H ND+YF G +IFA+ K +Y
Sbjct: 113 PLRRIGQAFVIATSLKVNVSGVKIPEHINDEYFKRKSTAQKT------GKNIFASGKTEY 166
Query: 659 VPSEQRKTDQKTVDEAVIKAIGARPDKKVLRGYL 760
SEQRK D KTVD ++ AI P+ K L GYL
Sbjct: 167 TVSEQRKKDIKTVDAPILAAIKKHPEHKFLFGYL 200
Score = 65.7 bits (153), Expect = 3e-11
Identities = 36/58 (62%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Frame = +3
Query: 345 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPQRYVSA 515
+R L GTV I+LAGRH GKRVV + LP SGLLLVTGP N PLRRI Q +V A
Sbjct: 67 LRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIA 124
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 82 RNYDLGNGVMRFSKSKMFHKKAKYK 156
RN+DL GV+RFS S++ KK + K
Sbjct: 12 RNFDLSPGVLRFSASRLRLKKGEKK 36
>Z83102-9|CAI79156.1| 82|Caenorhabditis elegans Hypothetical
protein C54C8.12 protein.
Length = 82
Score = 31.1 bits (67), Expect = 0.92
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +3
Query: 276 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKR 410
FYPT+ +A S G P + PN ++ V A RHAG R
Sbjct: 26 FYPTEISTKARSHGHPVNTLGESEDPNFQVDNVPGERARRHAGPR 70
>AC024744-1|AAL00859.1| 685|Caenorhabditis elegans Hypothetical
protein Y108G3AL.3 protein.
Length = 685
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/70 (27%), Positives = 34/70 (48%)
Frame = +3
Query: 474 SCPLRRIPQRYVSAPPPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKR 653
+ P R P R + E + T N +N T+RR S+V NA + S+P++++
Sbjct: 492 NAPATRPPSRKAAGGSHEPRAKTPNQKNKDERPTTRR----SSVDKNAPKRNDSVPRERK 547
Query: 654 NTFHLSSAKP 683
++ +KP
Sbjct: 548 SSVSHDESKP 557
>Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical protein
C02B4.1 protein.
Length = 1461
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +2
Query: 245 PEQSPQT*EVLLPHSGENPCFIW--WPSIQQACTQDPTQPEDRNCL 376
PEQ QT E L E FIW W S ++C QD Q + CL
Sbjct: 1068 PEQHIQTEECNLNSCLE--LFIWSDWSSCSKSCGQDGIQTRQKLCL 1111
>Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical protein
C02B4.1 protein.
Length = 1461
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +2
Query: 245 PEQSPQT*EVLLPHSGENPCFIW--WPSIQQACTQDPTQPEDRNCL 376
PEQ QT E L E FIW W S ++C QD Q + CL
Sbjct: 1068 PEQHIQTEECNLNSCLE--LFIWSDWSSCSKSCGQDGIQTRQKLCL 1111
>AF043700-6|AAB97569.2| 443|Caenorhabditis elegans Hypothetical
protein K09H9.2 protein.
Length = 443
Score = 28.7 bits (61), Expect = 4.9
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = -3
Query: 439 PLGRIPTSTT--LLPACLPARRMQTVPIFRLGRILRTCLLNGRPPDEARIFS*VG*KDFL 266
P+ I ++TT LL CL A T+P F++ I C G + + S KD L
Sbjct: 132 PMKIIESATTVLLLHKCLEAPDSPTLPNFQVKTIGGKCFSTGELCPQVDVLSIGRLKDML 191
Query: 265 RLRGLFW 245
R + L W
Sbjct: 192 REQELRW 198
>AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.
Length = 1461
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +2
Query: 245 PEQSPQT*EVLLPHSGENPCFIW--WPSIQQACTQDPTQPEDRNCL 376
PEQ QT E L E FIW W S ++C QD Q + CL
Sbjct: 1068 PEQHIQTEECNLNSCLE--LFIWSDWSSCSKSCGQDGIQTRQKLCL 1111
>Z50740-1|CAA90607.1| 1089|Caenorhabditis elegans Hypothetical
protein F31B12.2 protein.
Length = 1089
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = +3
Query: 588 RSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*SKPS 722
RSA +V+ +V+ + + R + HLS+++PI +S S P+
Sbjct: 364 RSAVSVEGVLLKVLAEVAELVRQSQHLSASEPITEESPSAGSPPA 408
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,875,849
Number of Sequences: 27780
Number of extensions: 380201
Number of successful extensions: 1123
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1121
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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