Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30851
         (777 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.15 
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    25   1.0  
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    24   1.4  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    24   1.4  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   5.5  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   9.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   9.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.5 bits (58), Expect = 0.15
 Identities = 22/101 (21%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
 Frame = +3

Query: 471 NSCPLRRIPQRYVSAPPPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKK 650
           +S P   +    +S PPP F  +  +  + S ++++ R  +   +  +A   M  +P   
Sbjct: 365 SSIPKLNLSTALMSQPPPNFGVSQVSPVSMSALVSAVRSPAGGQLPPSAGAPMPPIP--- 421

Query: 651 RNTFHLSSAKPIRRQSTRL*SKPSEPD---PTRRCSADTSS 764
            N  ++S   P+      + + P+ P    P RR  +D S+
Sbjct: 422 -NMSNMSGMPPLPNMPGSMPTMPTMPSMAGPIRRRISDKSA 461


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 302 TDFLLSGVEGLPTFEGTVLVPPFFSPPICFTT 207
           T FL++  E LP  E T L+  ++   IC  T
Sbjct: 256 TVFLMTIRESLPPTEKTPLISLYYGVSICLVT 287


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 715 FDHSLVDCLLIGFALLRWNVFLFFCGKDVITLFA 614
           FD +L+DC+  G   L   V ++    +  TLFA
Sbjct: 29  FDSTLLDCIQSGIENLDSGVGIYAPDAEAYTLFA 62


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 715 FDHSLVDCLLIGFALLRWNVFLFFCGKDVITLFA 614
           FD +L+DC+  G   L   V ++    +  TLFA
Sbjct: 45  FDSTLLDCIQSGIENLDSGVGIYAPDAEAYTLFA 78


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = +3

Query: 234 EWGNQNSPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPN 356
           ++GNQ++   RRK  +  +E        +P  +++    PN
Sbjct: 120 DYGNQDNRNDRRKKTFAAREDNDEEEAQKPKEQYIPPELPN 160


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 497 SALCIGTSTRISLGNFKLPKHFNDDYF 577
           +AL I  ST  ++   K+P++FN+  F
Sbjct: 681 NALLILISTVYAVKTRKIPENFNESKF 707


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 497 SALCIGTSTRISLGNFKLPKHFNDDYF 577
           +AL I  ST  ++   K+P++FN+  F
Sbjct: 771 NALLILISTVYAVKTRKIPENFNESKF 797


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,734
Number of Sequences: 438
Number of extensions: 4600
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)