Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30851
(777 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila... 74 9e-14
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila... 74 9e-14
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila... 71 7e-13
At2g33240.1 68415.m04072 myosin, putative similar to myosin (GI:... 32 0.37
At1g49890.1 68414.m05593 expressed protein contains Pfam domain,... 32 0.49
At2g27270.1 68415.m03277 expressed protein 31 0.85
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 30 2.0
At1g52820.1 68414.m05970 2-oxoglutarate-dependent dioxygenase, p... 30 2.0
At3g23890.1 68416.m03002 DNA topoisomerase, ATP-hydrolyzing / DN... 29 3.4
At4g00895.1 68417.m00121 ATP synthase delta chain-related contai... 28 6.0
At3g05050.1 68416.m00548 protein kinase family protein contains ... 28 6.0
>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 74.1 bits (174), Expect = 9e-14
Identities = 39/87 (44%), Positives = 56/87 (64%)
Frame = +3
Query: 249 NSPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGI 428
++P+++ FYP ++ ++ R +K + +R ++ GTV I+LAGR GKRVV +
Sbjct: 55 DAPVEKPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFLKQ 112
Query: 429 LPSGLLLVTGPFAFNSCPLRRIPQRYV 509
L SGLLLVTGPF N PLRR+ Q YV
Sbjct: 113 LASGLLLVTGPFKINGVPLRRVNQAYV 139
Score = 52.0 bits (119), Expect = 4e-07
Identities = 35/93 (37%), Positives = 46/93 (49%)
Frame = +2
Query: 476 VPATPYSSALCIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKEK 655
VP + A IGTST++ + L K F+D YF EG+ A K+EK
Sbjct: 129 VPLRRVNQAYVIGTSTKVDISGVTLDK-FDDKYFGKVAEKKKKKT---EGEFFEAEKEEK 184
Query: 656 YVPSEQRKTDQKTVDEAVIKAIGARPDKKVLRG 754
+ +K DQK VD A+IKAI A P+ K G
Sbjct: 185 KEIPQGKKDDQKAVDAALIKAIEAVPELKTYLG 217
>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 74.1 bits (174), Expect = 9e-14
Identities = 39/87 (44%), Positives = 56/87 (64%)
Frame = +3
Query: 249 NSPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGI 428
++P+++ FYP ++ ++ R +K + +R ++ GTV I+LAGR GKRVV +
Sbjct: 55 DAPVEKPPKFYPAED-VKKPLPNRRTAKPTK-LRASITPGTVLIILAGRFKGKRVVFLKQ 112
Query: 429 LPSGLLLVTGPFAFNSCPLRRIPQRYV 509
L SGLLLVTGPF N PLRR+ Q YV
Sbjct: 113 LASGLLLVTGPFKINGVPLRRVNQAYV 139
Score = 52.0 bits (119), Expect = 4e-07
Identities = 35/93 (37%), Positives = 46/93 (49%)
Frame = +2
Query: 476 VPATPYSSALCIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKEK 655
VP + A IGTST++ + L K F+D YF EG+ A K+EK
Sbjct: 129 VPLRRVNQAYVIGTSTKVDISGVTLDK-FDDKYFGKVAEKKKKKT---EGEFFEAEKEEK 184
Query: 656 YVPSEQRKTDQKTVDEAVIKAIGARPDKKVLRG 754
+ +K DQK VD A+IKAI A P+ K G
Sbjct: 185 KEIPQVKKDDQKAVDAALIKAIEAVPELKTYLG 217
>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
to 60S ribosomal protein L6 GI:7208784 from [Cicer
arietinum]
Length = 233
Score = 71.3 bits (167), Expect = 7e-13
Identities = 38/87 (43%), Positives = 55/87 (63%)
Frame = +3
Query: 249 NSPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGI 428
++P+++ FYP ++ ++ R K + ++ ++ GTV I+LAGR GKRVV +
Sbjct: 55 DAPVEKPAKFYPAED-VKKPLVNRRKPKPTK-LKASITPGTVLIILAGRFKGKRVVFLKQ 112
Query: 429 LPSGLLLVTGPFAFNSCPLRRIPQRYV 509
L SGLLLVTGPF N PLRR+ Q YV
Sbjct: 113 LSSGLLLVTGPFKINGVPLRRVNQAYV 139
Score = 54.8 bits (126), Expect = 6e-08
Identities = 36/93 (38%), Positives = 48/93 (51%)
Frame = +2
Query: 476 VPATPYSSALCIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKEK 655
VP + A IGTST+I + K F+D YF EG+ A K+EK
Sbjct: 129 VPLRRVNQAYVIGTSTKIDISGVNTEK-FDDKYFGKVAEKKKKKT---EGEFFEAEKEEK 184
Query: 656 YVPSEQRKTDQKTVDEAVIKAIGARPDKKVLRG 754
+++K DQKTVD A+IK+I A P+ KV G
Sbjct: 185 KEIPQEKKEDQKTVDAALIKSIEAVPELKVYLG 217
>At2g33240.1 68415.m04072 myosin, putative similar to myosin
(GI:433663) [Arabidopsis thaliana]; myosin my5A
(SP:Q02440) {Gallus gallus}
Length = 1770
Score = 32.3 bits (70), Expect = 0.37
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = +3
Query: 600 NVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*S--KPSEPDPTRRCSADTSSG 767
NV+ V++S Q +++ H SA+ + +S+ S KPSE +P + S D SSG
Sbjct: 1454 NVKRKLAPVLSSCIQGLKDSSHEFSAETLSAESSEQNSPEKPSEENPPEKLSEDNSSG 1511
>At1g49890.1 68414.m05593 expressed protein contains Pfam domain,
PF04484: Family of unknown function (DUF566)
Length = 659
Score = 31.9 bits (69), Expect = 0.49
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Frame = +3
Query: 486 RRIPQRYVSAPPPEFHSATSNCQNTSMMITSRRIRSASN-VQSNAKRVMTSLPQKKRNTF 662
+++P RY+S P S+T+ T+ TS S+S+ + +KR + P R+T
Sbjct: 34 KQVPSRYLSPSPSHSVSSTTTTTTTTTTTTSSSSSSSSSAILRTSKRYPSPSPLLSRSTT 93
Query: 663 HLSSAKPIRRQSTRL*SKPSEPDPTRRCSA 752
+ S++ I+ S L K S+ RR SA
Sbjct: 94 N-SASNSIKTPS--LLPKRSQSVDRRRPSA 120
>At2g27270.1 68415.m03277 expressed protein
Length = 231
Score = 31.1 bits (67), Expect = 0.85
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Frame = +3
Query: 246 QNSPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVG 425
+N P +R+ PT++K A G SKH R + + + C+ GK ++ G
Sbjct: 11 KNGPTTKREE--PTKKKTEAKEEGAAASKHSRVVYSD---KSRCL----SKNGKTIIYFG 61
Query: 426 ILPSGLLLVTGPFAFNSCPLR-RIPQ 500
+ + +LL+ FAFN ++ R+P+
Sbjct: 62 VPAALILLIICVFAFNYIAIQPRVPR 87
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +3
Query: 255 PLKRRKSFYPTQEKIRASSGGRPFS-KHVRR 344
P++RR+S P +E++ S GGR S H+++
Sbjct: 525 PVRRRRSLTPDEERVSLSQGGRHTSPSHIKQ 555
>At1g52820.1 68414.m05970 2-oxoglutarate-dependent dioxygenase,
putative similar to AOP1 [Arabidopsis
lyrata][GI:16118889]; contains Pfam profile PF03171:
2OG-Fe(II) oxygenase superfamily domain
Length = 317
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 485 TPYSSALCIGTSTRISLGNFKLPK 556
+PY + GT TR SLG F +PK
Sbjct: 244 SPYHRVMMTGTETRYSLGLFSIPK 267
>At3g23890.1 68416.m03002 DNA topoisomerase, ATP-hydrolyzing / DNA
topoisomerase II / DNA gyrase (TOP2) identical to
SP|P30182 DNA topoisomerase II (EC 5.99.1.3) {Arabidopsis
thaliana}
Length = 1473
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +2
Query: 638 ATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKV 745
ATK K P+ RK ++TV + AIG P+KKV
Sbjct: 1354 ATKAAK-PPAAPRKRGKQTVASTEVLAIGVSPEKKV 1388
>At4g00895.1 68417.m00121 ATP synthase delta chain-related contains
weak similarity to Swiss-Prot:P32980 ATP synthase delta
chain, chloroplast precursor [Nicotiana tabacum]
Length = 191
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +3
Query: 495 PQRYVSAPPPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSL--PQKKRN 656
P R V+ PPP H ++ +++ + Q + +R+M L +KKRN
Sbjct: 80 PSRVVTPPPPPVHDKAASGFAAALVSVCQSKNCLGRTQEDVRRLMEFLVGEEKKRN 135
>At3g05050.1 68416.m00548 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 593
Score = 28.3 bits (60), Expect = 6.0
Identities = 22/67 (32%), Positives = 34/67 (50%)
Frame = +3
Query: 540 TSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*SKP 719
T ++TS ++ + SASN + + + QKK N F ++ AK + + R SKP
Sbjct: 40 TETTESTSAVV----VASASNGEE-VRNHEDVVDQKKENGFVVTEAKERKSKGERKRSKP 94
Query: 720 SEPDPTR 740
PDP R
Sbjct: 95 --PDPRR 99
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,052,724
Number of Sequences: 28952
Number of extensions: 359371
Number of successful extensions: 1016
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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