Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30850
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein glycotr...    47   3e-06
SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|ch...    27   3.7  
SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|...    27   3.7  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    25   8.6  
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc...    25   8.6  

>SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein
           glycotransferase subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 46.8 bits (106), Expect = 3e-06
 Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
 Frame = +2

Query: 521 PLLFEGTGLIVDKDNSLVLPILSADSTAYSYNPK--SQVKEYPHAVGRKTVLIAALQARN 694
           P+L++G G  +   N    PIL  + T+Y YN K  ++V + P A G +  L++ LQ+  
Sbjct: 166 PILYKGIGHYLGP-NPQTQPILRGNPTSYIYNTKTEAEVSKNPWAAGTQLFLVSVLQSST 224

Query: 695 NARIVFSGSLFFFSDE 742
             R+  SGS+    DE
Sbjct: 225 GERVGLSGSIDMLKDE 240



 Score = 34.3 bits (75), Expect = 0.019
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +1

Query: 121 HSQFFKSLQERGYGLTFKLADDANLVLSKYGEYLYKNLIVFAPSVSSL 264
           +S F +SL +R + +      D +  L +YGE LY NLI+ +    SL
Sbjct: 35  YSTFLQSLTDRDFDVKTSYIKDESAKLFEYGERLYDNLILLSSQSKSL 82


>SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 234

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = -3

Query: 442 SSVTS*LKWSMTAADS-SSISNPHSEAISLYTSPA-AALPAIRRFPPSSMNLVMASLSTC 269
           SS T+ L  S ++    +  +NP+S  ++    P  + LPA  R  PSS +   +   T 
Sbjct: 124 SSTTNSLSSSSSSVSHMNQDANPNSTVLTFTAVPYDSCLPAPDRHTPSSASSRASETGTT 183

Query: 268 PPNSRRKE 245
            P S R +
Sbjct: 184 SPQSMRNQ 191


>SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 287

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +2

Query: 650 VGRKTVLIAALQARNNARI-VFSGS 721
           +G KT ++AAL A  N+R+ VF+GS
Sbjct: 62  IGDKTFIVAALLAFENSRLTVFAGS 86


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 379 PHSEAISLYTSPAAALPAIRRFPPSSMNLVMASLSTCPPNSR 254
           P+S   +  T+PA+A P      PS+ N    S S+   N R
Sbjct: 388 PNSSTSNPSTAPASASPLASTLKPSTANDTNGSSSSSSSNPR 429


>SPBC6B1.04 |mde4||monopolin-like complex subunit
           Mde4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = -3

Query: 373 SEAISLYTSPAAALPAIRRFPPSSMNLVMASLSTCPPNSRRKERIL*DSC-INILRILTG 197
           S +I L +SP  + P+ +   P S +    S++  P N+R  ++ L D+   N+  I   
Sbjct: 282 STSIGLSSSPPQSSPSAQSSQPFSRDKYPHSMTVSPSNARYLKKHLDDTIPSNVSDINHN 341

Query: 196 QDLHHPQ 176
             L  PQ
Sbjct: 342 DHLKIPQ 348


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,970,721
Number of Sequences: 5004
Number of extensions: 61026
Number of successful extensions: 195
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)