Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30850
(744 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0771 + 5917550-5917829,5918390-5918526,5918617-5918742,591... 76 3e-14
04_03_0052 + 10257109-10257337,10257580-10257668,10257708-102582... 35 0.078
03_02_0955 - 12690405-12690842,12690940-12691130,12691208-126917... 30 2.2
09_01_0101 - 1558889-1558989,1559105-1559214,1559300-1559396,156... 29 2.9
09_04_0286 + 16400695-16401369,16401473-16401658,16402115-164025... 29 3.9
08_02_0903 + 22438406-22438614,22439640-22440366,22440494-224406... 29 5.2
02_05_1305 - 35586499-35586601,35586963-35587034,35587111-355872... 28 6.8
06_02_0173 - 12601025-12601071,12601632-12601698,12601857-126019... 28 9.0
>07_01_0771 +
5917550-5917829,5918390-5918526,5918617-5918742,
5919168-5919221,5919344-5919457,5919895-5919950,
5920017-5920058,5920580-5920655,5920765-5920836,
5920908-5921033,5921117-5921221,5921333-5921416,
5921636-5921683
Length = 439
Score = 76.2 bits (179), Expect = 3e-14
Identities = 37/73 (50%), Positives = 49/73 (67%)
Frame = +2
Query: 521 PLLFEGTGLIVDKDNSLVLPILSADSTAYSYNPKSQVKEYPHAVGRKTVLIAALQARNNA 700
P+LF G G V+ NSLVL +LSA +AYS NPKS++ P G L++ +QARNNA
Sbjct: 183 PVLFRGIGHAVNPSNSLVLKVLSASPSAYSANPKSKLASPPSLTGSAISLVSVMQARNNA 242
Query: 701 RIVFSGSLFFFSD 739
R++ SGSL FS+
Sbjct: 243 RVLISGSLDLFSN 255
Score = 74.1 bits (174), Expect = 1e-13
Identities = 32/56 (57%), Positives = 43/56 (76%)
Frame = +1
Query: 85 LVLIDNLNIKETHSQFFKSLQERGYGLTFKLADDANLVLSKYGEYLYKNLIVFAPS 252
LVL+D+L ++ +HS FF SLQ RG+ L F+LADD L L +YG+YLY L++FAPS
Sbjct: 36 LVLVDDLAVRSSHSAFFASLQGRGFDLDFRLADDPKLSLHRYGQYLYDGLVLFAPS 91
Score = 66.9 bits (156), Expect = 2e-11
Identities = 37/86 (43%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Frame = +3
Query: 261 FGGQVDSEAITKFIDDXXXXXXXXXXXXXDVYREIASECGFEMDEE-SAAVIDHFNYDVT 437
FGG VD +I +FID D+ R IA+ECG + DE+ A VIDH NY T
Sbjct: 95 FGGSVDQNSILEFIDAGHDMILAADSSASDLIRGIATECGVDFDEDPEAMVIDHINYAAT 154
Query: 438 D-EGDHTRIVVSPKNLIKAPTIVGDK 512
D EGDHT +++ +LI++ I+G K
Sbjct: 155 DAEGDHT--LIAGDDLIQSDVILGSK 178
>04_03_0052 +
10257109-10257337,10257580-10257668,10257708-10258289,
10258477-10258668,10259392-10259563,10260190-10260461,
10260682-10260801,10260912-10260968,10261631-10261831,
10262451-10262511,10262712-10263013
Length = 758
Score = 34.7 bits (76), Expect = 0.078
Identities = 20/74 (27%), Positives = 31/74 (41%)
Frame = -3
Query: 403 ADSSSISNPHSEAISLYTSPAAALPAIRRFPPSSMNLVMASLSTCPPNSRRKERIL*DSC 224
AD S+++N + A+ P P S+ + + PP +R R++ SC
Sbjct: 524 ADRSNVNNSDATALHTQERPVHTPETTNEIDPKSV--ITSEKENRPPTKQRLRRLIIRSC 581
Query: 223 INILRILTGQDLHH 182
NIL L HH
Sbjct: 582 NNILSWLKNHHRHH 595
>03_02_0955 -
12690405-12690842,12690940-12691130,12691208-12691718,
12692240-12693171,12693260-12693351,12693430-12693509,
12693568-12693621,12693734-12693850,12693949-12694194,
12694273-12694432,12694512-12694576,12694686-12694877,
12694980-12695061,12695153-12695925
Length = 1310
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Frame = -3
Query: 379 PHSEAISLYTS--PAAALPAIRRFPPSSMNLVMASLS-TCPPN 260
P +E++ S P+AA P ++ PP ++ V++SLS PPN
Sbjct: 23 PTAESVLRVASRDPSAAAPLLQALPPDGLDDVLSSLSPASPPN 65
>09_01_0101 -
1558889-1558989,1559105-1559214,1559300-1559396,
1560462-1560537,1561577-1561666,1561972-1562070
Length = 190
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +2
Query: 566 SLVLPILSADSTAYSYNPKSQVKEYPHAVGRKTVLIAALQARNNARIVFSGSLFFF 733
S V+PI D T +Y +SQ +E K ++ A + N A I F+G F++
Sbjct: 114 STVVPIKRNDGTI-TYQAQSQDEEALVTAASKLNMVLASKDSNTAEISFNGCKFYY 168
>09_04_0286 +
16400695-16401369,16401473-16401658,16402115-16402575,
16402678-16402836,16402914-16403265,16403360-16403653
Length = 708
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 640 PPCSWP*DSTDCSSASKKQCSYCFQWIVILL 732
PPC +P S DC + +QC + VILL
Sbjct: 577 PPCPFPMHSEDCPYSYTRQCDHDGPIFVILL 607
>08_02_0903 +
22438406-22438614,22439640-22440366,22440494-22440679,
22441310-22441770,22441869-22442027,22442098-22442449,
22442563-22442842,22443330-22443661
Length = 901
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 640 PPCSWP*DSTDCSSASKKQCSYCFQWIVILL 732
PPC +P S DC + +QC++ VI+L
Sbjct: 664 PPCPFPSHSEDCPYSYTRQCNHDGPIFVIML 694
>02_05_1305 -
35586499-35586601,35586963-35587034,35587111-35587232,
35587767-35587826,35587919-35587997,35588219-35588307,
35588405-35588492,35591761-35591821,35592546-35592890,
35593094-35594351
Length = 758
Score = 28.3 bits (60), Expect = 6.8
Identities = 19/76 (25%), Positives = 31/76 (40%)
Frame = -3
Query: 406 AADSSSISNPHSEAISLYTSPAAALPAIRRFPPSSMNLVMASLSTCPPNSRRKERIL*DS 227
A S+++ PH+ L SP+ + R P + S PP+ D+
Sbjct: 14 AVIKSTLTQPHNHHHLLAASPSLLAAVLHRLSPLPSTALAFFRSLPPPHPL-------DA 66
Query: 226 CINILRILTGQDLHHP 179
+ +LR+L HHP
Sbjct: 67 SLALLRLLAPHPRHHP 82
>06_02_0173 -
12601025-12601071,12601632-12601698,12601857-12601934,
12602235-12602396,12603309-12603440,12604604-12604656,
12605808-12606372
Length = 367
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -3
Query: 373 SEAISLYTSPAAALPAIRRFPPSSMNLVMASLSTCPPNSRRKER 242
S ++ Y AA+ PA R+ PP+S ++ PP S K++
Sbjct: 134 SSGLAAYGGAAASQPAPRQAPPASGRVLPHKKRGRPPGSGNKQQ 177
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,942,820
Number of Sequences: 37544
Number of extensions: 391438
Number of successful extensions: 1166
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1164
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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