Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30850
         (744 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1970| Best HMM Match : DDOST_48kD (HMM E-Value=0)                   89   3e-18
SB_48704| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)                   29   5.3  
SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35)               29   5.3  
SB_40971| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_5014| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-07)           28   7.0  
SB_54838| Best HMM Match : Vitellogenin_N (HMM E-Value=4.76441e-44)    28   9.2  

>SB_1970| Best HMM Match : DDOST_48kD (HMM E-Value=0)
          Length = 415

 Score = 89.4 bits (212), Expect = 3e-18
 Identities = 40/62 (64%), Positives = 49/62 (79%)
 Frame = +1

Query: 70  ADHETLVLIDNLNIKETHSQFFKSLQERGYGLTFKLADDANLVLSKYGEYLYKNLIVFAP 249
           A   TLVL+DN N KETHS FF SL+ +GY LTF+ ADDA+L L KYGE+LY NL++F+P
Sbjct: 26  AGQRTLVLLDNANTKETHSIFFSSLKAKGYELTFRTADDASLALVKYGEFLYDNLVIFSP 85

Query: 250 SV 255
           SV
Sbjct: 86  SV 87



 Score = 84.6 bits (200), Expect = 8e-17
 Identities = 41/95 (43%), Positives = 52/95 (54%)
 Frame = +3

Query: 258 EFGGQVDSEAITKFIDDXXXXXXXXXXXXXDVYREIASECGFEMDEESAAVIDHFNYDVT 437
           EFGG ++  AIT FID              D  RE+ SECG E DEE  AVIDH ++DV+
Sbjct: 89  EFGGSLNVRAITDFIDGGGNVLVAASSAIGDPLRELGSECGVEFDEEKTAVIDHISHDVS 148

Query: 438 DEGDHTRIVVSPKNLIKAPTIVGDKIHSLCYLKAL 542
           D   HT +V  P N+IKA T+ G  + S    K +
Sbjct: 149 DLDQHTLVVAEPSNVIKADTVTGKTVTSPLLFKGV 183


>SB_48704| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1044

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 21/89 (23%), Positives = 39/89 (43%)
 Frame = -2

Query: 467  YYNASVVSLISHIIVEVVYDCCRFLVHLKSTF*SDFSIYVSGRGVTSHKKVSAIVYEFGY 288
            Y N  + +++SH+    + DCC  L        +D  +Y+    V +  K       F Y
Sbjct: 860  YLNLIIKTMMSHLWASSL-DCCYILK-------ADDDVYIRVPSVIAWLKARRSHSRF-Y 910

Query: 287  GLTVYLSTKLETEGANTMRFLYKYSPYFD 201
            G  +Y ++++  +  +      KY PYF+
Sbjct: 911  GGDIYTNSEISRDPCSPWGISKKYYPYFE 939


>SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)
          Length = 3037

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 438 DEGDHTRIVVSPKNLIKAPTIVGDKIHSLC 527
           D+GD    V+SP++L+K+P +    +  LC
Sbjct: 632 DDGDDPMYVISPEDLLKSPDMCKSFLSFLC 661


>SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35)
          Length = 1242

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 409 TAADSSSISNPHSEAISLYTSPAAALP 329
           TA   S+I++PH+  +S  T+PAA  P
Sbjct: 476 TAQTRSAITSPHAYTVSSVTAPAATSP 502


>SB_40971| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 828

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -3

Query: 391 SISNPHSEAISLYTSPAAALPAIRRFPPSSMNLVMASLSTCPPNSR 254
           S SN  +  ISL TS A  +   +   P+ + L M    TCPP  R
Sbjct: 88  SPSNESNSTISLATSLAEEIA--KHLSPAVIRLCMGGSLTCPPGPR 131


>SB_5014| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-07)
          Length = 194

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 21/89 (23%), Positives = 39/89 (43%)
 Frame = -2

Query: 467 YYNASVVSLISHIIVEVVYDCCRFLVHLKSTF*SDFSIYVSGRGVTSHKKVSAIVYEFGY 288
           Y N  + +++SH+    + DCC  L        +D  +Y+    V +  K       F Y
Sbjct: 10  YLNLIIKTMMSHLWASSL-DCCYILK-------ADDDVYIRVPRVIAWLKARRSHSRF-Y 60

Query: 287 GLTVYLSTKLETEGANTMRFLYKYSPYFD 201
           G  +Y ++++  +  +      KY PYF+
Sbjct: 61  GGDIYTNSEISRDPCSPWGISKKYYPYFE 89


>SB_54838| Best HMM Match : Vitellogenin_N (HMM E-Value=4.76441e-44)
          Length = 2581

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
 Frame = -2

Query: 344 GRGVTSHKKVSAI--VYEFGY----GLTVYLSTKLETEGANTMRFLYKYSPYFDRTRFAS 183
           GR  T H+  S I  V E+      GL+ YLS  LET     MR ++    Y      + 
Sbjct: 201 GRNRTLHRNCSLIRSVLEYAAPVWAGLSAYLSDMLETVQRRAMRIIFSQVEYITALHSSG 260

Query: 182 SASL 171
             SL
Sbjct: 261 LGSL 264


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,043,868
Number of Sequences: 59808
Number of extensions: 455146
Number of successful extensions: 1145
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)