Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30850
         (744 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z36753-9|CAA85337.1|  445|Caenorhabditis elegans Hypothetical pr...    79   3e-15
Z83125-1|CAB05620.2|  420|Caenorhabditis elegans Hypothetical pr...    31   0.86 
AY204169-1|AAO39173.1|  414|Caenorhabditis elegans nuclear recep...    31   0.86 
AY037795-1|AAK94760.1|  420|Caenorhabditis elegans GLY-16 protein.     31   0.86 
Z70210-8|CAA94154.2|  414|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z71262-10|CAA95816.4|  436|Caenorhabditis elegans Hypothetical p...    30   1.5  
Z71262-9|CAA95817.2|  440|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AY037801-1|AAK94766.1|  436|Caenorhabditis elegans GLY-19 protein.     30   1.5  
AY037799-1|AAK94764.1|  352|Caenorhabditis elegans GLY-19 protein.     30   1.5  
AY037797-1|AAK94762.1|  412|Caenorhabditis elegans GLY-18 protein.     30   1.5  
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z49969-3|CAA90267.1|  792|Caenorhabditis elegans Hypothetical pr...    28   8.0  

>Z36753-9|CAA85337.1|  445|Caenorhabditis elegans Hypothetical
           protein T09A5.11 protein.
          Length = 445

 Score = 79.0 bits (186), Expect = 3e-15
 Identities = 37/73 (50%), Positives = 50/73 (68%)
 Frame = +2

Query: 521 PLLFEGTGLIVDKDNSLVLPILSADSTAYSYNPKSQVKEYPHAVGRKTVLIAALQARNNA 700
           P+LF+G GL+  K N+L L I+ A  TAYSY+PK+     P   G +T+L+  LQ+RNNA
Sbjct: 172 PVLFKGIGLVAGKTNNLALSIVRASGTAYSYDPKAVRATNPSIAGSRTLLVGGLQSRNNA 231

Query: 701 RIVFSGSLFFFSD 739
           RIVF+GS   FS+
Sbjct: 232 RIVFTGSSELFSN 244



 Score = 74.9 bits (176), Expect = 5e-14
 Identities = 40/93 (43%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
 Frame = +3

Query: 261 FGGQVDSEAITKFIDDXXXXXXXXXXXXXDVYREIASECGFEMDEESAAVIDHFNYDVT- 437
           FGG +    I+KF+D              D  REIA+E GFE +E   +VIDH NYD T 
Sbjct: 83  FGGSLSPSEISKFVDAGGNVLVAAGSNIGDALREIAAEHGFEFEEAGTSVIDHHNYDQTL 142

Query: 438 DEGDHTRIVVSPKNLIKAPTIVGD--KIHSLCY 530
           D GDHT +VV    LI A  IVG+  K+H + +
Sbjct: 143 DSGDHTTLVVGKDQLISAELIVGNSAKLHPVLF 175



 Score = 57.6 bits (133), Expect = 9e-09
 Identities = 25/57 (43%), Positives = 39/57 (68%)
 Frame = +1

Query: 85  LVLIDNLNIKETHSQFFKSLQERGYGLTFKLADDANLVLSKYGEYLYKNLIVFAPSV 255
           LVL +   +K+THS F  S++ERG+ LT + ADD+ L L K+G+ ++ +L + AP V
Sbjct: 24  LVLGETAAVKDTHSVFLNSVKERGHELTVRAADDSQLALFKHGQLIFDHLFILAPGV 80


>Z83125-1|CAB05620.2|  420|Caenorhabditis elegans Hypothetical
           protein T15D6.2 protein.
          Length = 420

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = -2

Query: 437 SHIIVEVVYDCCRFLVHLKSTF*SDFSIYVSG 342
           S+ I+  VYDC +FL HLKS +   +  Y+SG
Sbjct: 164 SYEIINSVYDCLKFLSHLKSNW--KYFQYLSG 193


>AY204169-1|AAO39173.1|  414|Caenorhabditis elegans nuclear receptor
           NHR-32 protein.
          Length = 414

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = -3

Query: 397 SSSISNPHSEAISLYTSPAAALPAIRRFPPSSMNLVMASLSTCPPNSRRKERIL*DSCIN 218
           SS +++P S    L  + A   PAI   PPS  +L++  +       RR+  +L   C +
Sbjct: 126 SSDMTSPGSAFTPLNINLARFTPAIPPSPPSDSSLIVRQVYDFMEQKRRRRAML---CGS 182

Query: 217 ILRILTGQD--LHHP 179
           +  IL+ Q+  L HP
Sbjct: 183 LEEILSEQEMTLRHP 197


>AY037795-1|AAK94760.1|  420|Caenorhabditis elegans GLY-16 protein.
          Length = 420

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = -2

Query: 437 SHIIVEVVYDCCRFLVHLKSTF*SDFSIYVSG 342
           S+ I+  VYDC +FL HLKS +   +  Y+SG
Sbjct: 164 SYEIINSVYDCLKFLSHLKSNW--KYFQYLSG 193


>Z70210-8|CAA94154.2|  414|Caenorhabditis elegans Hypothetical
           protein K08H2.8 protein.
          Length = 414

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = -3

Query: 397 SSSISNPHSEAISLYTSPAAALPAIRRFPPSSMNLVMASLSTCPPNSRRKERIL*DSCIN 218
           SS +++P S    L  + A   PAI   PPS  +L++  +       RR+  +L   C +
Sbjct: 126 SSDMTSPGSAFTPLNINLADFTPAIPPSPPSDSSLIVRQVYDFMEQKRRRRAML---CGS 182

Query: 217 ILRILTGQD--LHHP 179
           +  IL+ Q+  L HP
Sbjct: 183 LEEILSEQEMTLRHP 197


>Z71262-10|CAA95816.4|  436|Caenorhabditis elegans Hypothetical
           protein F22D6.12 protein.
          Length = 436

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -2

Query: 449 VSLISHIIVEVVYDCCRFLVHLKSTF*SDFSIYVSG 342
           +S  SH I++ VYDC  FL HL++ +   +  Y+SG
Sbjct: 177 ISWGSHEIIDSVYDCLEFLSHLETDW--RYFQYLSG 210


>Z71262-9|CAA95817.2|  440|Caenorhabditis elegans Hypothetical
           protein F22D6.11 protein.
          Length = 440

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -2

Query: 437 SHIIVEVVYDCCRFLVHLKSTF*SDFSIYVSG 342
           SH I+   YDC  FL HLKS +   +  Y+SG
Sbjct: 184 SHEIINSAYDCLEFLSHLKSDW--RYFQYLSG 213


>AY037801-1|AAK94766.1|  436|Caenorhabditis elegans GLY-19 protein.
          Length = 436

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -2

Query: 449 VSLISHIIVEVVYDCCRFLVHLKSTF*SDFSIYVSG 342
           +S  SH I++ VYDC  FL HL++ +   +  Y+SG
Sbjct: 177 ISWGSHEIIDSVYDCLEFLSHLETDW--RYFQYLSG 210


>AY037799-1|AAK94764.1|  352|Caenorhabditis elegans GLY-19 protein.
          Length = 352

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -2

Query: 449 VSLISHIIVEVVYDCCRFLVHLKSTF*SDFSIYVSG 342
           +S  SH I++ VYDC  FL HL++ +   +  Y+SG
Sbjct: 93  ISWGSHEIIDSVYDCLEFLSHLETDW--RYFQYLSG 126


>AY037797-1|AAK94762.1|  412|Caenorhabditis elegans GLY-18 protein.
          Length = 412

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -2

Query: 437 SHIIVEVVYDCCRFLVHLKSTF*SDFSIYVSG 342
           SH I+   YDC  FL HLKS +   +  Y+SG
Sbjct: 156 SHEIINSAYDCLEFLSHLKSDW--RYFQYLSG 185


>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical
           protein F40H6.5 protein.
          Length = 1288

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = -3

Query: 445 PSSVTS*LKWSMTAADSSSISNPHSEAISLYTSPAAALPAIRRFP-PSSMNLVMASLSTC 269
           PS   S    SMT   S S ++  S  +S   +PA + P I  +  PSS N    S++T 
Sbjct: 486 PSYAFSTTTSSMTTTASDSTTSDSSVIVSSSKNPAVSNPFITTYSLPSSPNNPFISITTT 545

Query: 268 PPNS 257
           P ++
Sbjct: 546 PDSA 549


>Z49969-3|CAA90267.1|  792|Caenorhabditis elegans Hypothetical
           protein W01C9.3 protein.
          Length = 792

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = -3

Query: 346 PAAALPAIRRFPPSSMNLVMASLSTCPPNSRRKE 245
           PA  +P++   PPS    ++   +  PP+S++++
Sbjct: 125 PAGTIPSLGSMPPSRSGSIITGPNPSPPSSQKRK 158


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,429,898
Number of Sequences: 27780
Number of extensions: 341776
Number of successful extensions: 1014
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)