Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30850
         (744 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g66680.1 68418.m08406 dolichyl-diphosphooligosaccharide-prote...    79   4e-15
At3g25500.1 68416.m03171 formin homology 2 domain-containing pro...    28   5.7  
At3g06500.1 68416.m00754 beta-fructofuranosidase, putative / inv...    28   5.7  
At5g27870.1 68418.m03343 pectinesterase family protein similar t...    27   9.9  
At2g42330.1 68415.m05239 D111/G-patch domain-containing protein ...    27   9.9  
At1g05600.1 68414.m00580 pentatricopeptide (PPR) repeat-containi...    27   9.9  

>At5g66680.1 68418.m08406 dolichyl-diphosphooligosaccharide-protein
           glycosyltransferase 48kDa subunit family protein similar
           to SP|Q05052 Dolichyl-diphosphooligosaccharide--protein
           glycosyltransferase 48 kDa subunit precursor (EC
           2.4.1.119) (Oligosaccharyl transferase 48 kDa subunit)
           {Canis familiaris}; contains Pfam profile PF03345:
           Dolichyl-diphosphooligosaccharide-protein
           glycosyltransferase 48kD subunit
          Length = 437

 Score = 78.6 bits (185), Expect = 4e-15
 Identities = 33/60 (55%), Positives = 46/60 (76%)
 Frame = +1

Query: 73  DHETLVLIDNLNIKETHSQFFKSLQERGYGLTFKLADDANLVLSKYGEYLYKNLIVFAPS 252
           D   LVL+D+L++K +HS FF +L+ RG+ L FKLA+D+ L L +YG+YLY  LI+FAPS
Sbjct: 30  DRRVLVLLDDLSLKSSHSIFFNTLKSRGFDLDFKLAEDSKLALQRYGQYLYDGLIIFAPS 89



 Score = 72.1 bits (169), Expect = 4e-13
 Identities = 34/73 (46%), Positives = 47/73 (64%)
 Frame = +2

Query: 521 PLLFEGTGLIVDKDNSLVLPILSADSTAYSYNPKSQVKEYPHAVGRKTVLIAALQARNNA 700
           P+LF G    ++  N+LVL +LSA  +AYS NP S++   P   G    L++ +QARNNA
Sbjct: 181 PVLFRGVAHSLNPTNNLVLKVLSASPSAYSANPSSKLSSPPQLTGSSISLVSVMQARNNA 240

Query: 701 RIVFSGSLFFFSD 739
           R+V SGS+  FSD
Sbjct: 241 RVVISGSVQLFSD 253



 Score = 64.9 bits (151), Expect = 5e-11
 Identities = 33/84 (39%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
 Frame = +3

Query: 261 FGGQVDSEAITKFIDDXXXXXXXXXXXXXDVYREIASECGFEMDEESAA-VIDHFNYDVT 437
           FGG +DS++I  F+D              D+ R IA+ECG + DE+S+A VIDH ++ V+
Sbjct: 93  FGGSLDSKSIADFVDSGRDLILSADTAASDLIRGIATECGVDFDEDSSAMVIDHTSFSVS 152

Query: 438 D-EGDHTRIVVSPKNLIKAPTIVG 506
           D +GDHT  +++  +L+K+  I+G
Sbjct: 153 DVDGDHT--LIAADDLVKSDVILG 174


>At3g25500.1 68416.m03171 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 1051

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = -3

Query: 424 LKWSMTAADSSSISNPHSEAISLY-TSPAAALPA-IRRFPPSSMNLVMASLSTCPPNSRR 251
           L +S T   SSS  N  S    LY +SP    PA    FP +  +L++   +  PPNS++
Sbjct: 49  LPFSSTTPPSSSDPNA-SPFFPLYPSSPPPPSPASFASFPANISSLIVPHATKSPPNSKK 107


>At3g06500.1 68416.m00754 beta-fructofuranosidase, putative /
           invertase, putative / saccharase, putative /
           beta-fructosidase, putative similar to neutral invertase
           [Daucus carota] GI:4200165; contains Pfam profile
           PF04853: Plant neutral invertase
          Length = 664

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -2

Query: 437 SHIIVEVVYDCCRFLVHLKSTF*SDFSIYVSGRGVTSHK 321
           S I V  +  CCRFL+  +S+    FS   SG+ + S K
Sbjct: 5   SCICVSAMKPCCRFLISFRSSSLFGFSPPNSGKFINSSK 43


>At5g27870.1 68418.m03343 pectinesterase family protein similar to
           pectinesterase (EC 3.1.1.11) from Salix gilgiana
           GI:6714532, Lycopersicon esculentum SP|Q43143, Phaseolus
           vulgaris SP|Q43111; contains Pfam profile PF01095
           pectinesterase
          Length = 732

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 23/80 (28%), Positives = 40/80 (50%)
 Frame = -3

Query: 502 TIVGALIRFLGDTTMRVWSPSSVTS*LKWSMTAADSSSISNPHSEAISLYTSPAAALPAI 323
           T+ G+ +    +TT    SPS+V +      T+  +  + +P S+  S   SP+ +LPA 
Sbjct: 572 TVTGSSLS--SNTTESSDSPSTVVT----PSTSPPAGHLGSP-SDTPSSVVSPSTSLPAG 624

Query: 322 RRFPPSSMNLVMASLSTCPP 263
           +   P +   ++ S ST PP
Sbjct: 625 QLGAPPATPSMVVSPSTSPP 644


>At2g42330.1 68415.m05239 D111/G-patch domain-containing protein
           similar to SP|Q9ERA6 Tuftelin-interacting protein 11
           {Mus musculus}; contains Pfam profile PF01585: G-patch
           domain
          Length = 752

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = -3

Query: 421 KWSMTAADSSSISNPHSEAISLYTSPAAALPAIRRFPPSSMNLVMASLST 272
           K  +   D+ SIS P+S+ +S    PA  +  I  + P     ++  L T
Sbjct: 382 KMLLEVEDNQSISTPYSQLVSEVILPAVRVSGINTWEPRDPEPMLRLLET 431


>At1g05600.1 68414.m00580 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile: PF01535 PPR repeat
          Length = 504

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +3

Query: 387 MDEESAAVIDHFNYDVTDEGDHTRIVVSPKNLIKAPTIVGDKIHSLC 527
           +D  SA   D F      EG+   + +  K     P I G K+ +LC
Sbjct: 298 LDSYSAMATDLFEEGKLVEGEEVLLAMRSKGFEPTPFIYGAKVKALC 344


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,483,791
Number of Sequences: 28952
Number of extensions: 319817
Number of successful extensions: 870
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)