Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30848
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha...    57   2e-09
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    28   1.5  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    26   6.2  
SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr ...    26   6.2  
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb...    26   6.2  
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy...    26   6.2  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    25   8.2  

>SPBC36.09 |sap61||U2 snRNP-associated protein
           sap61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 57.2 bits (132), Expect = 2e-09
 Identities = 23/58 (39%), Positives = 37/58 (63%)
 Frame = +2

Query: 353 FTDEEGYGKYLDLHSCYEKYINLKGIEKVDYITYLSIFDHLFDIPRERKNSETGITFV 526
           F  EE YG+++DL+ CYE+YINL  ++ + Y+ YL   +    IP+  KN +T I ++
Sbjct: 127 FRGEEMYGRFMDLNECYEEYINLSNVQHISYLEYLKNLEDFDQIPKPEKN-QTYINYI 183



 Score = 43.6 bits (98), Expect = 3e-05
 Identities = 18/63 (28%), Positives = 36/63 (57%)
 Frame = +3

Query: 66  RETINADHRLKNLHDRYIEASIRLKELYEDKDGLRKEEISALSGPHEFQEFYSRLKQIKE 245
           RE +  +H+     +++ E S +L   +E  D L+ +E++ ++   +  EFY  L +I+E
Sbjct: 35  RERLRLEHQSAQFLNQFRETSKKLLVSHESSDRLKDQEVARINADDDLTEFYKSLGEIQE 94

Query: 246 FHR 254
           FH+
Sbjct: 95  FHK 97



 Score = 35.1 bits (77), Expect = 0.010
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = +1

Query: 514 NYIRALLTYMKDFVSRVKPLLDQAQEMALGHQEFLKQWESGTFPGW 651
           NYI  L  Y+  F  R  PL +  + +A+   EF   WE+G  PGW
Sbjct: 181 NYITHLYEYLVSFYRRTHPLSNLDKIIAVFDTEFDAAWEAG-LPGW 225


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 21/92 (22%), Positives = 44/92 (47%)
 Frame = +3

Query: 114 YIEASIRLKELYEDKDGLRKEEISALSGPHEFQEFYSRLKQIKEFHRNIQMKYLYPCL*N 293
           Y+    R +EL   +  L+  +   L+   E++E Y R + +     N+  + L P + +
Sbjct: 182 YVGDDRRHRELDRQRQELQSVDAERLA--EEYREKYGRSQTVVGDTSNVPQRLLLPSVND 239

Query: 294 LKSWQIKGKILLRITQFLSSSLMKKAMESIWT 389
              W ++ KI     + +  ++M+KAM+  +T
Sbjct: 240 PNIWAVRCKI--GKEKDIVFTIMRKAMDLQYT 269


>SPAC6C3.06c |||P-type ATPase, calcium
            transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
 Frame = -3

Query: 343  NCVILSRIFPLICQLFKFYRHGYR-------YFIWMFL*NSLICLSLE*NSW 209
            +CV++S    LI QLF FY  G+              + N LI ++L+ N+W
Sbjct: 911  SCVLISVYQGLIIQLFTFYLIGFEEEGKMLAVCFSCLIFNELIMVALQINTW 962


>SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 649 ILEMYQTPIVLKTPDALEPFL 587
           ILE YQTP  +  P  L+P++
Sbjct: 407 ILENYQTPDGVNVPKVLQPYM 427


>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 730

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +3

Query: 66  RETINADHRLKNLHDRYIEASIRLKELYEDKDGLRKEEISALSGPH--EFQEFYSRLKQ 236
           RE +N   R +    + +EA    +E  E+K        S++SG H  EF E+   LK+
Sbjct: 192 REPLNRIARQQEAAQKLVEALEGAQEEIENKSVSGNTNSSSVSGNHAAEFLEYVESLKK 250


>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 478

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 138 KELYEDKDGLRKEEISALSGPHEFQEFYSR 227
           KE  +++D L+KEE   +  P EF+ F  R
Sbjct: 314 KEGLDEQDNLQKEESVHIDVPAEFEAFDER 343


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 374  GKYLDLHSCYEKYINLKGIEK 436
            G Y+DL SC  K+  L G +K
Sbjct: 1344 GAYIDLISCITKFAKLNGNQK 1364


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,103,179
Number of Sequences: 5004
Number of extensions: 65884
Number of successful extensions: 193
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)