Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30848
         (717 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0252 - 23935615-23936159,23936606-23936745,23936846-23937381     32   0.40 
03_06_0126 + 31865339-31867943,31868176-31868660                       30   2.1  
02_03_0176 + 16010806-16011095,16011983-16012061,16012389-160124...    29   2.8  
12_01_0411 + 3276679-3276687,3277430-3277493,3278256-3278297,327...    29   3.7  
10_08_1043 + 22524322-22524346,22524931-22525028,22525287-225253...    29   3.7  
08_02_0077 - 11979497-11979654,11980012-11982178                       28   6.4  
05_05_0299 - 23930657-23932627                                         28   8.5  

>04_04_0252 - 23935615-23936159,23936606-23936745,23936846-23937381
          Length = 406

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 26/89 (29%), Positives = 46/89 (51%)
 Frame = +3

Query: 9   LHILHTMLKYIIMVMFLQHRETINADHRLKNLHDRYIEASIRLKELYEDKDGLRKEEISA 188
           LH +H   K +I     +   T+  D   K LH ++   S +L EL  + DGLRKE   +
Sbjct: 123 LHQVHMEAKRLIAE---RQMLTVEMDKVTKELH-KFSGDSKKLPELLTELDGLRKEH-QS 177

Query: 189 LSGPHEFQEFYSRLKQIKEFHRNIQMKYL 275
           L    E+++  + +KQ+++  R ++M  +
Sbjct: 178 LRSAFEYEK-NTNIKQVEQM-RTMEMNLM 204


>03_06_0126 + 31865339-31867943,31868176-31868660
          Length = 1029

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = -2

Query: 350 RQELCNPQQDFPFDLPTLQILQTWVQIFHLDVSMKLFNLLKSRIELLEL 204
           R +L     DF  DLP+L++LQ W   F   V  +L      R++LL+L
Sbjct: 321 RNKLRGDIPDFVGDLPSLEVLQLWENNFTGGVPRRLGR--NGRLQLLDL 367


>02_03_0176 +
           16010806-16011095,16011983-16012061,16012389-16012464,
           16012541-16012630,16012878-16013031,16013172-16013181,
           16013240-16013407,16014087-16014485,16014580-16014990
          Length = 558

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +2

Query: 374 GKYLDLHSCYEKYINLKGIEKVDYITYLSIFDHLF 478
           GK LDLH  +++  +  GI+K  Y++ L  F+ L+
Sbjct: 103 GKDLDLHQLFKEVTSRGGIDKKYYMSLLYHFERLY 137


>12_01_0411 +
           3276679-3276687,3277430-3277493,3278256-3278297,
           3279047-3279063,3280011-3281258
          Length = 459

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 323 DFPFDLPTLQILQTWVQIFHLDVSMKLFNLLKSRI 219
           DFP D P  Q+L TW +  H D  + + N+ K  I
Sbjct: 172 DFPRDFP--QVLDTWTRPVHCDGLLLVSNMSKKMI 204


>10_08_1043 +
           22524322-22524346,22524931-22525028,22525287-22525384,
           22525878-22525935,22526642-22526743,22526840-22526901,
           22527441-22527519,22527669-22527788,22527869-22527982,
           22528749-22528883
          Length = 296

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 511 RNYIRALLTYMKDFVSRVKPLLDQAQEMALGHQEFL 618
           +NYIR L+ Y   +V  +    D  Q++  GH   L
Sbjct: 64  QNYIRPLVDYRNSYVGNISIFQDMEQKLQQGHNVVL 99


>08_02_0077 - 11979497-11979654,11980012-11982178
          Length = 774

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 87  HRLKNLHDRYIEASIRLKELYEDKDGLRKEEISALSGP 200
           H  +N H+RY E S+ +KE  +D   +  E+I     P
Sbjct: 298 HAEENRHERYTETSVHVKEAMKDLKLVFGEDIRCAQMP 335


>05_05_0299 - 23930657-23932627
          Length = 656

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 105 HDRYIEASIRLKELYEDKDGLRKEEISALSGPHEFQEFYSRLKQIKE 245
           H R++E S+R KE    +    KEE  A +   + +E    LK +K+
Sbjct: 322 HSRFVEGSVRKKESSRKQQRKNKEERIARAKQEQAEEL-KHLKNLKK 367


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,599,171
Number of Sequences: 37544
Number of extensions: 365734
Number of successful extensions: 881
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)