Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30848
(717 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58659| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.31
SB_34217| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.93
SB_34646| Best HMM Match : DUF1233 (HMM E-Value=3) 30 1.6
SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021) 30 2.2
SB_59156| Best HMM Match : FlaC_arch (HMM E-Value=0.77) 29 2.8
SB_25763| Best HMM Match : MgtE_N (HMM E-Value=1.9) 29 2.8
SB_5674| Best HMM Match : FlaC_arch (HMM E-Value=0.97) 29 2.8
SB_9880| Best HMM Match : FlaC_arch (HMM E-Value=0.77) 29 3.8
SB_43160| Best HMM Match : Occludin_ELL (HMM E-Value=8.4) 29 3.8
SB_39078| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_20569| Best HMM Match : LRR_1 (HMM E-Value=1.1e-27) 29 3.8
SB_11828| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_6394| Best HMM Match : FlaC_arch (HMM E-Value=0.77) 29 3.8
SB_50076| Best HMM Match : Filament (HMM E-Value=0.15) 29 5.0
SB_42106| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 28 6.6
SB_26151| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_49157| Best HMM Match : Occludin_ELL (HMM E-Value=8.4) 28 8.7
SB_38212| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029) 28 8.7
SB_4970| Best HMM Match : IBV_3C (HMM E-Value=2.2) 28 8.7
SB_53847| Best HMM Match : FlaC_arch (HMM E-Value=0.59) 28 8.7
SB_53843| Best HMM Match : FlaC_arch (HMM E-Value=0.59) 28 8.7
SB_16311| Best HMM Match : FlaC_arch (HMM E-Value=0.5) 28 8.7
>SB_58659| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 32.7 bits (71), Expect = 0.31
Identities = 22/81 (27%), Positives = 44/81 (54%)
Frame = +3
Query: 84 DHRLKNLHDRYIEASIRLKELYEDKDGLRKEEISALSGPHEFQEFYSRLKQIKEFHRNIQ 263
D R++ L ++ E RL ++ +++DG+RKE + ++ + L+ +FH+ +
Sbjct: 37 DSRIEELENQLSELKHRLADVVKERDGMRKELGKEKKPFLQPRKPFCDLEPKAQFHKKQR 96
Query: 264 MKYLYPCL*NLKSWQIKGKIL 326
+K NL+S+Q GK+L
Sbjct: 97 LKNGLRS--NLRSFQQIGKLL 115
>SB_34217| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 219
Score = 31.1 bits (67), Expect = 0.93
Identities = 19/60 (31%), Positives = 34/60 (56%)
Frame = +3
Query: 15 ILHTMLKYIIMVMFLQHRETINADHRLKNLHDRYIEASIRLKELYEDKDGLRKEEISALS 194
++ ++ ++M+M + RET+ + +L DRY E + +KE+ E L KEE + LS
Sbjct: 68 VVIVVVMVVVMIMMVV-RETLIYNAKLSEQCDRYDEMAKIMKEVSEKYPKLSKEERNLLS 126
>SB_34646| Best HMM Match : DUF1233 (HMM E-Value=3)
Length = 209
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/62 (24%), Positives = 34/62 (54%)
Frame = +3
Query: 84 DHRLKNLHDRYIEASIRLKELYEDKDGLRKEEISALSGPHEFQEFYSRLKQIKEFHRNIQ 263
D R++ L ++ E RL ++ +++DG+RKE + ++ + L+ +FH+ +
Sbjct: 37 DSRIEELENQLSELKHRLADVVKERDGMRKELGKEKKPFLQPRKHFCDLEPKAQFHKKSE 96
Query: 264 MK 269
+K
Sbjct: 97 IK 98
>SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)
Length = 1217
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +3
Query: 105 HDRYIEASIRLKELYEDKDGL--RKEEISALSGPHEFQEFYSRLKQIKEFHRNIQMK 269
H++ +E S RL+ + DKD E +FQ F ++L+Q+++ ++ K
Sbjct: 687 HEKLVETSARLQRMIPDKDAFINTLRESRTEEYQAKFQAFQAKLEQVRKERLEVRRK 743
>SB_59156| Best HMM Match : FlaC_arch (HMM E-Value=0.77)
Length = 339
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/65 (24%), Positives = 35/65 (53%)
Frame = +3
Query: 75 INADHRLKNLHDRYIEASIRLKELYEDKDGLRKEEISALSGPHEFQEFYSRLKQIKEFHR 254
I D R++ L ++ E RL ++ +++DG+RKE + ++ + L+ +FH+
Sbjct: 37 IPRDSRIEELENQLSELKHRLADVVKERDGMRKELGKEKKPFLQPRKPFCDLEPKAQFHK 96
Query: 255 NIQMK 269
++K
Sbjct: 97 KSEIK 101
>SB_25763| Best HMM Match : MgtE_N (HMM E-Value=1.9)
Length = 483
Score = 29.5 bits (63), Expect = 2.8
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Frame = +3
Query: 21 HTMLKYIIMVMFLQHRETINADHRLKNL-HDRYIEASIRLKELYEDKDGLRKEEISALSG 197
H LKY+ V +LQ E + L+ L H + +E +L+ + + + E + L
Sbjct: 139 HQQLKYLQRVQYLQQLEHLQQLEHLQQLKHLQQLEHPQQLEYPQQLEHPQQLEHLQQLEH 198
Query: 198 PHEFQEFYSRLKQIKEFHRNIQMKY 272
P + E +LK +++ Q++Y
Sbjct: 199 PRQL-EHLQQLKHLQQLEYPQQLEY 222
>SB_5674| Best HMM Match : FlaC_arch (HMM E-Value=0.97)
Length = 273
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/62 (24%), Positives = 34/62 (54%)
Frame = +3
Query: 84 DHRLKNLHDRYIEASIRLKELYEDKDGLRKEEISALSGPHEFQEFYSRLKQIKEFHRNIQ 263
D R++ L ++ E RL ++ +++DG+RKE + ++ + L+ +FH+ +
Sbjct: 15 DSRIEGLENQLSELKHRLSDVVKERDGMRKELGKEKKPFLQPRKPFCDLEPKAQFHKKSE 74
Query: 264 MK 269
+K
Sbjct: 75 IK 76
>SB_9880| Best HMM Match : FlaC_arch (HMM E-Value=0.77)
Length = 272
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/62 (24%), Positives = 34/62 (54%)
Frame = +3
Query: 84 DHRLKNLHDRYIEASIRLKELYEDKDGLRKEEISALSGPHEFQEFYSRLKQIKEFHRNIQ 263
D R++ L ++ E RL ++ +++DG+RKE + ++ + L+ +FH+ +
Sbjct: 37 DSRIEELENQLSELKHRLADVVKERDGMRKELGKEKKPFLQPRKPFCDLEPKAQFHKKSE 96
Query: 264 MK 269
+K
Sbjct: 97 IK 98
>SB_43160| Best HMM Match : Occludin_ELL (HMM E-Value=8.4)
Length = 116
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/62 (24%), Positives = 34/62 (54%)
Frame = +3
Query: 84 DHRLKNLHDRYIEASIRLKELYEDKDGLRKEEISALSGPHEFQEFYSRLKQIKEFHRNIQ 263
D R++ L ++ E RL ++ +++DG+RKE + ++ + L+ +FH+ +
Sbjct: 37 DSRIEELENQLSELKHRLADVVKERDGMRKELGKEKKPFLQPRKPFCDLEPKAQFHKKSE 96
Query: 264 MK 269
+K
Sbjct: 97 IK 98
>SB_39078| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/62 (24%), Positives = 34/62 (54%)
Frame = +3
Query: 84 DHRLKNLHDRYIEASIRLKELYEDKDGLRKEEISALSGPHEFQEFYSRLKQIKEFHRNIQ 263
D R++ L ++ E RL ++ +++DG+RKE + ++ + L+ +FH+ +
Sbjct: 15 DSRIEELENQLSELKHRLADVVKERDGMRKELGKEKKPFLQPRKPFCDLEPKAQFHKKSE 74
Query: 264 MK 269
+K
Sbjct: 75 IK 76
>SB_20569| Best HMM Match : LRR_1 (HMM E-Value=1.1e-27)
Length = 309
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -1
Query: 585 SLIQKRFNSGHKIFHISEQCTNVIPVSL 502
SL++K GHKI ++S + VIP SL
Sbjct: 37 SLLEKAIGQGHKILNLSHRELTVIPDSL 64
>SB_11828| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 297
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/62 (24%), Positives = 34/62 (54%)
Frame = +3
Query: 84 DHRLKNLHDRYIEASIRLKELYEDKDGLRKEEISALSGPHEFQEFYSRLKQIKEFHRNIQ 263
D R++ L ++ E RL ++ +++DG+RKE + ++ + L+ +FH+ +
Sbjct: 37 DSRIEELENQLSELKHRLADVVKERDGMRKELGKEKKPFLQPRKPFCDLEPKAQFHKKSE 96
Query: 264 MK 269
+K
Sbjct: 97 IK 98
>SB_6394| Best HMM Match : FlaC_arch (HMM E-Value=0.77)
Length = 149
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/62 (24%), Positives = 34/62 (54%)
Frame = +3
Query: 84 DHRLKNLHDRYIEASIRLKELYEDKDGLRKEEISALSGPHEFQEFYSRLKQIKEFHRNIQ 263
D R++ L ++ E RL ++ +++DG+RKE + ++ + L+ +FH+ +
Sbjct: 37 DSRIEELENQLSELKHRLADVVKERDGMRKELGKEKKPFLQPRKPFCDLEPKAQFHKKSE 96
Query: 264 MK 269
+K
Sbjct: 97 IK 98
>SB_50076| Best HMM Match : Filament (HMM E-Value=0.15)
Length = 380
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +3
Query: 96 KNLHDRYIEASIRLKELYEDKDGLRKE 176
+ LH+ YIE +L+EL++D + +KE
Sbjct: 133 EELHNDYIEMQRKLEELWQDNEKYKKE 159
>SB_42106| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 929
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -3
Query: 367 FFISELDRNCVILSRIFPLI-CQLFKFYRHGYR 272
+F D+N V++ R+FP I C++ + Y + +R
Sbjct: 882 YFKGNRDQNSVVMHRLFPRIRCRVIRLYPYTWR 914
>SB_26151| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/56 (28%), Positives = 31/56 (55%)
Frame = +3
Query: 96 KNLHDRYIEASIRLKELYEDKDGLRKEEISALSGPHEFQEFYSRLKQIKEFHRNIQ 263
KNL + AS++LK+ + +++E + + G EFQ+ ++ KQ+ E +Q
Sbjct: 177 KNLENEV--ASLKLKQ-----ETIKEEVVEEIEGDEEFQKLQNKYKQVVEEKNTLQ 225
>SB_49157| Best HMM Match : Occludin_ELL (HMM E-Value=8.4)
Length = 116
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/62 (24%), Positives = 33/62 (53%)
Frame = +3
Query: 84 DHRLKNLHDRYIEASIRLKELYEDKDGLRKEEISALSGPHEFQEFYSRLKQIKEFHRNIQ 263
D R+ L ++ E RL ++ +++DG+RKE + ++ + L+ +FH+ +
Sbjct: 37 DSRIGELENQLSELKHRLADVVKERDGMRKELGKEKKPFLQPRKPFCDLEPKAQFHKKSE 96
Query: 264 MK 269
+K
Sbjct: 97 IK 98
>SB_38212| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1892
Score = 27.9 bits (59), Expect = 8.7
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = +2
Query: 347 VEFTDEEGYGKYLDLHSCYEKYINLKGIEKVD---YITYLSIFDHLFDIPRERKNSETGI 517
+E D Y + +D+ E+ +EKVD Y+ + I+DHL + + TG
Sbjct: 671 LEKVDIRDYLEKVDIRDYLEEVDIRDHLEKVDIRDYVEKVDIWDHLEEADVRDEPCLTGQ 730
Query: 518 TFVHC 532
T++ C
Sbjct: 731 TYIDC 735
>SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029)
Length = 1866
Score = 27.9 bits (59), Expect = 8.7
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Frame = +3
Query: 132 RLKELYEDKDGL-RKEEI----SALSGPHEFQEFYSRLKQIKEFHRNIQMKYLYPC 284
R K+ Y+D D L R+ + SAL+G ++F +++ K RNIQ + + PC
Sbjct: 1415 RKKKKYKDPDNLWRRHTVDFAASALAGLASTEDF-TKISLRKTGRRNIQTRLIEPC 1469
>SB_4970| Best HMM Match : IBV_3C (HMM E-Value=2.2)
Length = 1094
Score = 27.9 bits (59), Expect = 8.7
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 10/77 (12%)
Frame = -3
Query: 466 KYAQVCNIIYFLNTFQ----------VNVLFITRM*VQILSIAFFISELDRNCVILSRIF 317
K ++CN++ FQ V V+ I +Q S FF+ ++ NC +S+I
Sbjct: 43 KKNKICNLVLTRKAFQCRRFDEVRCFVRVIGIQYSKMQEQSTFFFLIKVTHNCSQISKIS 102
Query: 316 PLICQLFKFYRHGYRYF 266
++ +F + RYF
Sbjct: 103 FIVFTIFTIFSAVLRYF 119
>SB_53847| Best HMM Match : FlaC_arch (HMM E-Value=0.59)
Length = 259
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/62 (24%), Positives = 33/62 (53%)
Frame = +3
Query: 84 DHRLKNLHDRYIEASIRLKELYEDKDGLRKEEISALSGPHEFQEFYSRLKQIKEFHRNIQ 263
D R+ L ++ E RL ++ +++DG+RKE + ++ + L+ +FH+ +
Sbjct: 37 DSRIGELENQLSELKHRLADVVKERDGMRKELGKEKKPFLQPRKPFCDLEPKAQFHKKSE 96
Query: 264 MK 269
+K
Sbjct: 97 IK 98
>SB_53843| Best HMM Match : FlaC_arch (HMM E-Value=0.59)
Length = 149
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/62 (24%), Positives = 33/62 (53%)
Frame = +3
Query: 84 DHRLKNLHDRYIEASIRLKELYEDKDGLRKEEISALSGPHEFQEFYSRLKQIKEFHRNIQ 263
D R+ L ++ E RL ++ +++DG+RKE + ++ + L+ +FH+ +
Sbjct: 37 DSRIGELENQLSELKHRLADVVKERDGMRKELGKEKKPFLQPRKPFCDLEPKAQFHKKSE 96
Query: 264 MK 269
+K
Sbjct: 97 IK 98
>SB_16311| Best HMM Match : FlaC_arch (HMM E-Value=0.5)
Length = 240
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/62 (24%), Positives = 33/62 (53%)
Frame = +3
Query: 84 DHRLKNLHDRYIEASIRLKELYEDKDGLRKEEISALSGPHEFQEFYSRLKQIKEFHRNIQ 263
D R+ L ++ E RL ++ +++DG+RKE + ++ + L+ +FH+ +
Sbjct: 37 DSRIGELENQLSELKHRLADVVKERDGMRKELGKQKKPFLQPRKPFCDLEPKAQFHKKSE 96
Query: 264 MK 269
+K
Sbjct: 97 IK 98
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,065,439
Number of Sequences: 59808
Number of extensions: 437212
Number of successful extensions: 1012
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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