Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30848
(717 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U08815-1|AAA19625.1| 501|Homo sapiens SAP 61 protein. 145 2e-34
BC011523-1|AAH11523.1| 501|Homo sapiens splicing factor 3a, sub... 145 2e-34
BC002395-1|AAH02395.1| 501|Homo sapiens splicing factor 3a, sub... 145 2e-34
AL603790-5|CAH69930.1| 501|Homo sapiens splicing factor 3a, sub... 145 2e-34
AK222554-1|BAD96274.1| 501|Homo sapiens splicing factor 3a, sub... 145 2e-34
X81789-1|CAA57388.1| 501|Homo sapiens splicing factor SF3a60 pr... 142 1e-33
>U08815-1|AAA19625.1| 501|Homo sapiens SAP 61 protein.
Length = 501
Score = 145 bits (351), Expect = 2e-34
Identities = 66/85 (77%), Positives = 72/85 (84%)
Frame = +2
Query: 254 KHPNEISVPMSVEFEELANQRENPAEDYTVPVEFTDEEGYGKYLDLHSCYEKYINLKGIE 433
KHPNEI VPMSVEFEEL RENP+E+ VEFTDEEGYG+YLDLH CY KYINLK E
Sbjct: 97 KHPNEICVPMSVEFEELLKARENPSEEAQNLVEFTDEEGYGRYLDLHDCYLKYINLKASE 156
Query: 434 KVDYITYLSIFDHLFDIPRERKNSE 508
K+DYITYLSIFD LFDIP+ERKN+E
Sbjct: 157 KLDYITYLSIFDQLFDIPKERKNAE 181
Score = 99.5 bits (237), Expect = 1e-20
Identities = 42/63 (66%), Positives = 55/63 (87%)
Frame = +3
Query: 66 RETINADHRLKNLHDRYIEASIRLKELYEDKDGLRKEEISALSGPHEFQEFYSRLKQIKE 245
R+ IN+DHR + + DRY+E S L++LY+DKDGLRKEE++A+SGP+EF EFY+RLKQIKE
Sbjct: 34 RDQINSDHRTRAMQDRYMEVSGNLRDLYDDKDGLRKEELNAISGPNEFAEFYNRLKQIKE 93
Query: 246 FHR 254
FHR
Sbjct: 94 FHR 96
Score = 90.2 bits (214), Expect = 6e-18
Identities = 39/67 (58%), Positives = 48/67 (71%)
Frame = +1
Query: 511 RNYIRALLTYMKDFVSRVKPLLDQAQEMALGHQEFLKQWESGTFPGWPKETGGALTNVGA 690
+ Y+ LL Y++D+ RVKPL DQ + EF K+WE+GTFPGWPKET ALT+ GA
Sbjct: 183 KRYLEMLLEYLQDYTDRVKPLQDQNELFGKIQAEFEKKWENGTFPGWPKETSSALTHAGA 242
Query: 691 HLDLSAF 711
HLDLSAF
Sbjct: 243 HLDLSAF 249
>BC011523-1|AAH11523.1| 501|Homo sapiens splicing factor 3a,
subunit 3, 60kDa protein.
Length = 501
Score = 145 bits (351), Expect = 2e-34
Identities = 66/85 (77%), Positives = 72/85 (84%)
Frame = +2
Query: 254 KHPNEISVPMSVEFEELANQRENPAEDYTVPVEFTDEEGYGKYLDLHSCYEKYINLKGIE 433
KHPNEI VPMSVEFEEL RENP+E+ VEFTDEEGYG+YLDLH CY KYINLK E
Sbjct: 97 KHPNEICVPMSVEFEELLKARENPSEEAQNLVEFTDEEGYGRYLDLHDCYLKYINLKASE 156
Query: 434 KVDYITYLSIFDHLFDIPRERKNSE 508
K+DYITYLSIFD LFDIP+ERKN+E
Sbjct: 157 KLDYITYLSIFDQLFDIPKERKNAE 181
Score = 99.5 bits (237), Expect = 1e-20
Identities = 42/63 (66%), Positives = 55/63 (87%)
Frame = +3
Query: 66 RETINADHRLKNLHDRYIEASIRLKELYEDKDGLRKEEISALSGPHEFQEFYSRLKQIKE 245
R+ IN+DHR + + DRY+E S L++LY+DKDGLRKEE++A+SGP+EF EFY+RLKQIKE
Sbjct: 34 RDQINSDHRTRAMQDRYMEVSGNLRDLYDDKDGLRKEELNAISGPNEFAEFYNRLKQIKE 93
Query: 246 FHR 254
FHR
Sbjct: 94 FHR 96
Score = 90.2 bits (214), Expect = 6e-18
Identities = 39/67 (58%), Positives = 48/67 (71%)
Frame = +1
Query: 511 RNYIRALLTYMKDFVSRVKPLLDQAQEMALGHQEFLKQWESGTFPGWPKETGGALTNVGA 690
+ Y+ LL Y++D+ RVKPL DQ + EF K+WE+GTFPGWPKET ALT+ GA
Sbjct: 183 KRYLEMLLEYLQDYTDRVKPLQDQNELFGKIQAEFEKKWENGTFPGWPKETSSALTHAGA 242
Query: 691 HLDLSAF 711
HLDLSAF
Sbjct: 243 HLDLSAF 249
>BC002395-1|AAH02395.1| 501|Homo sapiens splicing factor 3a,
subunit 3, 60kDa protein.
Length = 501
Score = 145 bits (351), Expect = 2e-34
Identities = 66/85 (77%), Positives = 72/85 (84%)
Frame = +2
Query: 254 KHPNEISVPMSVEFEELANQRENPAEDYTVPVEFTDEEGYGKYLDLHSCYEKYINLKGIE 433
KHPNEI VPMSVEFEEL RENP+E+ VEFTDEEGYG+YLDLH CY KYINLK E
Sbjct: 97 KHPNEICVPMSVEFEELLKARENPSEEAQNLVEFTDEEGYGRYLDLHDCYLKYINLKASE 156
Query: 434 KVDYITYLSIFDHLFDIPRERKNSE 508
K+DYITYLSIFD LFDIP+ERKN+E
Sbjct: 157 KLDYITYLSIFDQLFDIPKERKNAE 181
Score = 99.5 bits (237), Expect = 1e-20
Identities = 42/63 (66%), Positives = 55/63 (87%)
Frame = +3
Query: 66 RETINADHRLKNLHDRYIEASIRLKELYEDKDGLRKEEISALSGPHEFQEFYSRLKQIKE 245
R+ IN+DHR + + DRY+E S L++LY+DKDGLRKEE++A+SGP+EF EFY+RLKQIKE
Sbjct: 34 RDQINSDHRTRAMQDRYMEVSGNLRDLYDDKDGLRKEELNAISGPNEFAEFYNRLKQIKE 93
Query: 246 FHR 254
FHR
Sbjct: 94 FHR 96
Score = 90.2 bits (214), Expect = 6e-18
Identities = 39/67 (58%), Positives = 48/67 (71%)
Frame = +1
Query: 511 RNYIRALLTYMKDFVSRVKPLLDQAQEMALGHQEFLKQWESGTFPGWPKETGGALTNVGA 690
+ Y+ LL Y++D+ RVKPL DQ + EF K+WE+GTFPGWPKET ALT+ GA
Sbjct: 183 KRYLEMLLEYLQDYTDRVKPLQDQNELFGKIQAEFEKKWENGTFPGWPKETSSALTHAGA 242
Query: 691 HLDLSAF 711
HLDLSAF
Sbjct: 243 HLDLSAF 249
>AL603790-5|CAH69930.1| 501|Homo sapiens splicing factor 3a,
subunit 3, 60kDa protein.
Length = 501
Score = 145 bits (351), Expect = 2e-34
Identities = 66/85 (77%), Positives = 72/85 (84%)
Frame = +2
Query: 254 KHPNEISVPMSVEFEELANQRENPAEDYTVPVEFTDEEGYGKYLDLHSCYEKYINLKGIE 433
KHPNEI VPMSVEFEEL RENP+E+ VEFTDEEGYG+YLDLH CY KYINLK E
Sbjct: 97 KHPNEICVPMSVEFEELLKARENPSEEAQNLVEFTDEEGYGRYLDLHDCYLKYINLKASE 156
Query: 434 KVDYITYLSIFDHLFDIPRERKNSE 508
K+DYITYLSIFD LFDIP+ERKN+E
Sbjct: 157 KLDYITYLSIFDQLFDIPKERKNAE 181
Score = 99.5 bits (237), Expect = 1e-20
Identities = 42/63 (66%), Positives = 55/63 (87%)
Frame = +3
Query: 66 RETINADHRLKNLHDRYIEASIRLKELYEDKDGLRKEEISALSGPHEFQEFYSRLKQIKE 245
R+ IN+DHR + + DRY+E S L++LY+DKDGLRKEE++A+SGP+EF EFY+RLKQIKE
Sbjct: 34 RDQINSDHRTRAMQDRYMEVSGNLRDLYDDKDGLRKEELNAISGPNEFAEFYNRLKQIKE 93
Query: 246 FHR 254
FHR
Sbjct: 94 FHR 96
Score = 90.2 bits (214), Expect = 6e-18
Identities = 39/67 (58%), Positives = 48/67 (71%)
Frame = +1
Query: 511 RNYIRALLTYMKDFVSRVKPLLDQAQEMALGHQEFLKQWESGTFPGWPKETGGALTNVGA 690
+ Y+ LL Y++D+ RVKPL DQ + EF K+WE+GTFPGWPKET ALT+ GA
Sbjct: 183 KRYLEMLLEYLQDYTDRVKPLQDQNELFGKIQAEFEKKWENGTFPGWPKETSSALTHAGA 242
Query: 691 HLDLSAF 711
HLDLSAF
Sbjct: 243 HLDLSAF 249
>AK222554-1|BAD96274.1| 501|Homo sapiens splicing factor 3a,
subunit 3 variant protein.
Length = 501
Score = 145 bits (351), Expect = 2e-34
Identities = 66/85 (77%), Positives = 72/85 (84%)
Frame = +2
Query: 254 KHPNEISVPMSVEFEELANQRENPAEDYTVPVEFTDEEGYGKYLDLHSCYEKYINLKGIE 433
KHPNEI VPMSVEFEEL RENP+E+ VEFTDEEGYG+YLDLH CY KYINLK E
Sbjct: 97 KHPNEICVPMSVEFEELLKARENPSEEAQNLVEFTDEEGYGRYLDLHDCYLKYINLKASE 156
Query: 434 KVDYITYLSIFDHLFDIPRERKNSE 508
K+DYITYLSIFD LFDIP+ERKN+E
Sbjct: 157 KLDYITYLSIFDQLFDIPKERKNAE 181
Score = 99.5 bits (237), Expect = 1e-20
Identities = 42/63 (66%), Positives = 55/63 (87%)
Frame = +3
Query: 66 RETINADHRLKNLHDRYIEASIRLKELYEDKDGLRKEEISALSGPHEFQEFYSRLKQIKE 245
R+ IN+DHR + + DRY+E S L++LY+DKDGLRKEE++A+SGP+EF EFY+RLKQIKE
Sbjct: 34 RDQINSDHRTRAMQDRYMEVSGNLRDLYDDKDGLRKEELNAISGPNEFAEFYNRLKQIKE 93
Query: 246 FHR 254
FHR
Sbjct: 94 FHR 96
Score = 90.2 bits (214), Expect = 6e-18
Identities = 39/67 (58%), Positives = 48/67 (71%)
Frame = +1
Query: 511 RNYIRALLTYMKDFVSRVKPLLDQAQEMALGHQEFLKQWESGTFPGWPKETGGALTNVGA 690
+ Y+ LL Y++D+ RVKPL DQ + EF K+WE+GTFPGWPKET ALT+ GA
Sbjct: 183 KRYLEMLLEYLQDYTDRVKPLQDQNELFGKIQAEFEKKWENGTFPGWPKETSSALTHAGA 242
Query: 691 HLDLSAF 711
HLDLSAF
Sbjct: 243 HLDLSAF 249
>X81789-1|CAA57388.1| 501|Homo sapiens splicing factor SF3a60
protein.
Length = 501
Score = 142 bits (344), Expect = 1e-33
Identities = 65/85 (76%), Positives = 71/85 (83%)
Frame = +2
Query: 254 KHPNEISVPMSVEFEELANQRENPAEDYTVPVEFTDEEGYGKYLDLHSCYEKYINLKGIE 433
KHPNEI VPMSVEFEEL RENP+E+ VEFTDEEGYG+YLDLH CY KYINLK E
Sbjct: 97 KHPNEICVPMSVEFEELLKARENPSEEAQNLVEFTDEEGYGRYLDLHDCYLKYINLKASE 156
Query: 434 KVDYITYLSIFDHLFDIPRERKNSE 508
K+DYITYLSIFD LFDIP+ RKN+E
Sbjct: 157 KLDYITYLSIFDQLFDIPKGRKNAE 181
Score = 99.5 bits (237), Expect = 1e-20
Identities = 42/63 (66%), Positives = 55/63 (87%)
Frame = +3
Query: 66 RETINADHRLKNLHDRYIEASIRLKELYEDKDGLRKEEISALSGPHEFQEFYSRLKQIKE 245
R+ IN+DHR + + DRY+E S L++LY+DKDGLRKEE++A+SGP+EF EFY+RLKQIKE
Sbjct: 34 RDQINSDHRTRAMQDRYMEVSGNLRDLYDDKDGLRKEELNAISGPNEFAEFYNRLKQIKE 93
Query: 246 FHR 254
FHR
Sbjct: 94 FHR 96
Score = 90.2 bits (214), Expect = 6e-18
Identities = 39/67 (58%), Positives = 48/67 (71%)
Frame = +1
Query: 511 RNYIRALLTYMKDFVSRVKPLLDQAQEMALGHQEFLKQWESGTFPGWPKETGGALTNVGA 690
+ Y+ LL Y++D+ RVKPL DQ + EF K+WE+GTFPGWPKET ALT+ GA
Sbjct: 183 KRYLEMLLEYLQDYTDRVKPLQDQNELFGKIQAEFEKKWENGTFPGWPKETSSALTHAGA 242
Query: 691 HLDLSAF 711
HLDLSAF
Sbjct: 243 HLDLSAF 249
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,096,048
Number of Sequences: 237096
Number of extensions: 2157597
Number of successful extensions: 4675
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4675
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8399192100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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