Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30848
         (717 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g06160.1 68418.m00687 splicing factor-related contains some s...    59   3e-09
At1g42515.1 68414.m04902 hypothetical protein                          29   2.3  
At1g10180.1 68414.m01148 expressed protein                             29   3.1  
At1g10920.1 68414.m01254 disease resistance protein (CC-NBS-LRR ...    29   4.1  
At3g58440.1 68416.m06513 meprin and TRAF homology domain-contain...    28   5.4  
At4g02570.1 68417.m00351 cullin family protein similar to cullin...    28   7.1  
At2g46130.1 68415.m05736 WRKY family transcription factor contai...    28   7.1  
At3g12550.1 68416.m01562 XH/XS domain-containing protein / XS zi...    27   9.4  
At2g40000.1 68415.m04915 expressed protein                             27   9.4  
At1g14790.1 68414.m01768 RNA-dependent RNA polymerase, putative ...    27   9.4  

>At5g06160.1 68418.m00687 splicing factor-related contains some
           similarity to splicing factor SP:Q12874 from [Homo
           sapiens]
          Length = 504

 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 34/95 (35%), Positives = 51/95 (53%)
 Frame = +2

Query: 254 KHPNEISVPMSVEFEELANQRENPAEDYTVPVEFTDEEGYGKYLDLHSCYEKYINLKGIE 433
           +HP+   V  + ++E  A  +E P       + F+ EEG G+YLDLH  Y +YIN K  E
Sbjct: 103 RHPSGRLVDANEDYE--ARLKEEPI------IAFSGEEGNGRYLDLHDMYNQYINSKFGE 154

Query: 434 KVDYITYLSIFDHLFDIPRERKNSETGITFVHCSL 538
           +V+Y  YL +F     IPR+ K S   + ++   L
Sbjct: 155 RVEYSAYLDVFSQPEKIPRKLKLSRQYMKYMEALL 189



 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 25/61 (40%), Positives = 41/61 (67%), Gaps = 5/61 (8%)
 Frame = +3

Query: 87  HRLKNLHDRYIEASIRLKELYEDKDGLRKEEISAL-----SGPHEFQEFYSRLKQIKEFH 251
           HR++++ +  +  + +L E YEDKDG   +EI+AL     +G + F EFY RLK+I+E+H
Sbjct: 42  HRVRHMIESIMLTTEKLVETYEDKDGAWDDEIAALGGQTATGTNVFSEFYDRLKEIREYH 101

Query: 252 R 254
           +
Sbjct: 102 K 102



 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +1

Query: 517 YIRALLTYMKDFVSRVKPLLDQAQEMALGHQEFLKQWESGTFPGWPKE 660
           Y+ ALL Y+  F  R +PL D  + ++    +F +Q+  G   G   E
Sbjct: 184 YMEALLEYLVYFFQRTEPLQDLDRILSKVCSDFEEQYADGIVEGLDNE 231


>At1g42515.1 68414.m04902 hypothetical protein
          Length = 206

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +1

Query: 520 IRALLTYMKDFVSRVKPLLDQAQEMALGHQEFLKQWESGTFPG 648
           IR  LT   D  S    LLD++    +GH EF  +   GT+ G
Sbjct: 67  IRFSLTEFVDITSLNCDLLDKSTTCEIGHYEFWNEMGVGTYDG 109


>At1g10180.1 68414.m01148 expressed protein
          Length = 769

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/54 (27%), Positives = 31/54 (57%)
 Frame = +3

Query: 6   FLHILHTMLKYIIMVMFLQHRETINADHRLKNLHDRYIEASIRLKELYEDKDGL 167
           F+ I+  +L+ +  ++ L   E++    R+  L+D+YI+  I+    + D+DGL
Sbjct: 398 FMQIVQDILEQLTHLVVLHFGESVLT--RILQLYDKYIDFLIKALPGHSDEDGL 449


>At1g10920.1 68414.m01254 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 727

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = +1

Query: 139 KNCMKIKMDYEKKKYQHCQVHMSSRSSIRDLSKLKSFIETSK*NICTHVCRI*RVGKSKG 318
           +N + I  +Y   + +HCQ+H   R      +K ++F+E  K +  T       + KS+ 
Sbjct: 355 RNMITIDKNYMFLRKKHCQMHDMMREVCLSKAKEENFLEIFKVSTATSAINARSLSKSRR 414

Query: 319 KSC*G 333
            S  G
Sbjct: 415 LSVHG 419


>At3g58440.1 68416.m06513 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 601

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 23/78 (29%), Positives = 39/78 (50%)
 Frame = +3

Query: 3   FFLHILHTMLKYIIMVMFLQHRETINADHRLKNLHDRYIEASIRLKELYEDKDGLRKEEI 182
           F L ++ TM + +     L + + + AD  L  L D   +     K+L + K+  ++EE+
Sbjct: 337 FLLSLIETMCQSLEE---LSNEDLVEADVALTYLRDAGFKVDWLEKKLDQLKEK-KEEEM 392

Query: 183 SALSGPHEFQEFYSRLKQ 236
           S L+  HE +E    LKQ
Sbjct: 393 SGLARLHEIEENLVILKQ 410


>At4g02570.1 68417.m00351 cullin family protein similar to cullin 3
           [Homo sapiens] GI:3639052; contains Pfam profile
           PF00888: Cullin family
          Length = 738

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 18  LHTMLKYIIMVMFLQHRETINADHRL-KNLHDRYIEASIRLKELYED 155
           LH+ +K  ++ +  + RE    D  L KN+ D Y+E  +   E YE+
Sbjct: 144 LHSKVKQAVIALVDKEREGEQIDRALLKNVLDIYVEIGMGQMERYEE 190


>At2g46130.1 68415.m05736 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 109

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +1

Query: 154 IKMDYEKKKYQHCQVHMSS-RSSIRDLSKLKSFIETSK*NICTHVC 288
           +K     + Y  C  HM + +  ++ LSK  S +ET+   I  H C
Sbjct: 43  VKNSLYPRSYYRCTQHMCNVKKQVQRLSKETSIVETTYEGIHNHPC 88


>At3g12550.1 68416.m01562 XH/XS domain-containing protein / XS zinc
           finger domain-containing protein contains Pfam domains
           PF03469: XH domain, PF03468: XS domain and PF03470: XS
           zinc finger domain
          Length = 635

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 78  NADHRLKNLHDRYIEASIRLKELYEDKDGLRKEEISALSG 197
           N  +RLK L  +Y + S++LK   E+K+ + +     L+G
Sbjct: 270 NKQYRLKKLQIKYSQDSVKLKYETEEKEKILRAYSEDLTG 309


>At2g40000.1 68415.m04915 expressed protein
          Length = 435

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +1

Query: 553 VSRVKPLLDQAQEMALGHQEFLKQWESGTFPGWPKE 660
           +S   P L  A E+ L   E  K W S  FP W  E
Sbjct: 42  ISCSAPALCSAYELYLRLPELRKLWSSRDFPQWTSE 77


>At1g14790.1 68414.m01768 RNA-dependent RNA polymerase, putative
           similar to RNA-directed RNA polymerase GB:CAA09697
           GI:4138282 [Nicotiana tabacum]
          Length = 1107

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/55 (21%), Positives = 27/55 (49%)
 Frame = +3

Query: 75  INADHRLKNLHDRYIEASIRLKELYEDKDGLRKEEISALSGPHEFQEFYSRLKQI 239
           +N  +R+   + +YI   +R+  + ED + +R  ++S  S      + Y R+  +
Sbjct: 384 VNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSMDLSPRSSTQRRTKLYDRIYSV 438


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,707,884
Number of Sequences: 28952
Number of extensions: 325419
Number of successful extensions: 856
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)