Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30846
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p...    28   0.95 
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    27   2.9  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    26   5.1  
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    26   5.1  
SPBC2D10.08c |||mitochondrial ribosomal protein subunit Yml6|Sch...    26   5.1  
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb...    25   8.8  

>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 28.3 bits (60), Expect = 0.95
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 354 DAVSGIXTDEEAIIEILCTLSNYGIRTISAFYEQLYGKSLESD 482
           DA++ +   +E I E   T  +Y IRT+S  Y+  Y  S   D
Sbjct: 215 DAITSLWDPQELICERSITRMDYPIRTLSFSYDSRYLASGSED 257


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = +3

Query: 447 YEQLYGKS--LESDLKGDTSGHLRDCACRCAWPIAMKTRASMKAQLKPMLKHWPPMVK 614
           YE    K+  L+SD+ G      RD A     PIA    ++ +  +    + W P +K
Sbjct: 50  YENFVSKNHVLQSDINGKKRDSNRDKAAVVTAPIASTHESNYEESVSKFKESWLPQLK 107


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 443  ILRTTVRQEPGIGLKRRHVG 502
            ++ T +  +PG  LK+RH+G
Sbjct: 1171 MMPTNIEHDPGCTLKKRHIG 1190


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 172 GY-HRRALPPRHRASLEIAETFKTNYGKD*LANSRVNS 282
           GY H  A+P +H+ ++ +AETF  +   D L    ++S
Sbjct: 753 GYSHTLAVPGKHKQNISMAETFSPSPRHDLLRQVAMSS 790


>SPBC2D10.08c |||mitochondrial ribosomal protein subunit
           Yml6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 261

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +2

Query: 182 DVLCRRGIVQASRSRRPSRLTMARID*RTQ-E*THRQLGKCHRRIDDSPAPLLR*GA 349
           D+L R  I +A   R+ +  +  R +        +RQ G  H R+ D+ +P+ R GA
Sbjct: 36  DILHRAVIYEADNDRQGTASSKRRNEITCSGRKLYRQKGTGHARVGDASSPIRRGGA 92


>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = -3

Query: 543 RLAMHNDTHNLLSVPTCRLLSPIPGSCRTVVRKMRIWYGYH 421
           +L    D  + + V    LL  +     T   ++R WYG+H
Sbjct: 151 KLKFSPDKVDTMIVQAIALLDDLDKELNTYAMRVREWYGWH 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,278,104
Number of Sequences: 5004
Number of extensions: 40216
Number of successful extensions: 120
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)