Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30842
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef...    75   8e-15
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef...    75   8e-15
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef...    75   8e-15
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    46   3e-06
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    37   0.003
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    25   6.6  
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom...    25   8.7  

>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
           Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 460

 Score = 74.9 bits (176), Expect = 8e-15
 Identities = 33/35 (94%), Positives = 34/35 (97%)
 Frame = +3

Query: 510 DSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 614
           DSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GK
Sbjct: 17  DSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGK 51



 Score = 32.7 bits (71), Expect = 0.043
 Identities = 13/15 (86%), Positives = 14/15 (93%)
 Frame = +1

Query: 463 MGKEKTHINIVVIGH 507
           MGKEK HIN+VVIGH
Sbjct: 1   MGKEKGHINVVVIGH 15


>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
           Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 74.9 bits (176), Expect = 8e-15
 Identities = 33/35 (94%), Positives = 34/35 (97%)
 Frame = +3

Query: 510 DSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 614
           DSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GK
Sbjct: 17  DSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGK 51



 Score = 32.7 bits (71), Expect = 0.043
 Identities = 13/15 (86%), Positives = 14/15 (93%)
 Frame = +1

Query: 463 MGKEKTHINIVVIGH 507
           MGKEK HIN+VVIGH
Sbjct: 1   MGKEKGHINVVVIGH 15


>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
           Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 74.9 bits (176), Expect = 8e-15
 Identities = 33/35 (94%), Positives = 34/35 (97%)
 Frame = +3

Query: 510 DSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 614
           DSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GK
Sbjct: 17  DSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGK 51



 Score = 32.7 bits (71), Expect = 0.043
 Identities = 13/15 (86%), Positives = 14/15 (93%)
 Frame = +1

Query: 463 MGKEKTHINIVVIGH 507
           MGKEK HIN+VVIGH
Sbjct: 1   MGKEKGHINVVVIGH 15


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 46.4 bits (105), Expect = 3e-06
 Identities = 19/35 (54%), Positives = 28/35 (80%)
 Frame = +3

Query: 510 DSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 614
           D+GKST  G++++  G +DKRT+EK E+EA+E GK
Sbjct: 248 DAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGK 282


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +3

Query: 510 DSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 614
           DSGKST  G ++++ G I+ R+++K   EA   GK
Sbjct: 187 DSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGK 221


>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 182 PWQPP*MNSSQFFVS 226
           PW+PP M+SS F +S
Sbjct: 180 PWKPPIMSSSAFLLS 194


>SPBC1703.13c |||inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 603 PGPPSRTSRWYVCQYHHIC 547
           P PP +T + Y  QY+ +C
Sbjct: 8   PAPPKKTLQLYTPQYYGLC 26


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,474,638
Number of Sequences: 5004
Number of extensions: 48997
Number of successful extensions: 120
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)