Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30842
(616 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 66 2e-11
03_01_0547 + 4093196-4093657,4094267-4095148 66 2e-11
03_01_0544 + 4082528-4082989,4083585-4084466 66 2e-11
03_01_0543 + 4076981-4077442,4078145-4079026 66 2e-11
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299... 42 4e-04
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 42 5e-04
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 42 5e-04
03_05_0793 + 27755704-27756386,27756473-27757274,27757379-277576... 29 2.9
07_01_0733 + 5570084-5570282,5570395-5570600,5572484-5572624,557... 27 8.9
02_05_0564 + 30003817-30005778 27 8.9
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 66.5 bits (155), Expect = 2e-11
Identities = 30/35 (85%), Positives = 31/35 (88%)
Frame = +3
Query: 510 DSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 614
DSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K
Sbjct: 17 DSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK 51
Score = 35.9 bits (79), Expect = 0.026
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +1
Query: 463 MGKEKTHINIVVIGH 507
MGKEKTHINIVVIGH
Sbjct: 1 MGKEKTHINIVVIGH 15
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 66.5 bits (155), Expect = 2e-11
Identities = 30/35 (85%), Positives = 31/35 (88%)
Frame = +3
Query: 510 DSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 614
DSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K
Sbjct: 17 DSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK 51
Score = 35.9 bits (79), Expect = 0.026
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +1
Query: 463 MGKEKTHINIVVIGH 507
MGKEKTHINIVVIGH
Sbjct: 1 MGKEKTHINIVVIGH 15
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 66.5 bits (155), Expect = 2e-11
Identities = 30/35 (85%), Positives = 31/35 (88%)
Frame = +3
Query: 510 DSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 614
DSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K
Sbjct: 17 DSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK 51
Score = 35.9 bits (79), Expect = 0.026
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +1
Query: 463 MGKEKTHINIVVIGH 507
MGKEKTHINIVVIGH
Sbjct: 1 MGKEKTHINIVVIGH 15
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 66.5 bits (155), Expect = 2e-11
Identities = 30/35 (85%), Positives = 31/35 (88%)
Frame = +3
Query: 510 DSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 614
DSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K
Sbjct: 17 DSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK 51
Score = 35.9 bits (79), Expect = 0.026
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +1
Query: 463 MGKEKTHINIVVIGH 507
MGKEKTHINIVVIGH
Sbjct: 1 MGKEKTHINIVVIGH 15
>04_03_0107 +
11328267-11328276,11329059-11329170,11329862-11329907,
11330185-11330256,11332292-11332303,11332880-11332942,
11333038-11333192,11333303-11333367,11334645-11334795,
11335230-11335335,11335440-11335575,11336310-11336374,
11337003-11337188,11337298-11337399
Length = 426
Score = 41.9 bits (94), Expect = 4e-04
Identities = 16/35 (45%), Positives = 26/35 (74%)
Frame = +3
Query: 510 DSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 614
D+GKST G +++ G +D RTI+K+EKEA++ +
Sbjct: 4 DAGKSTAGGQILFLSGQVDDRTIQKYEKEAKDKSR 38
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = +3
Query: 510 DSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 614
DSGKST +G L++ G I K+ + K EKEA+E GK
Sbjct: 257 DSGKSTLSGRLLHLLGRISKKDMHKNEKEAKEKGK 291
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = +3
Query: 510 DSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 614
DSGKST +G L++ G I K+ + K EKEA+E GK
Sbjct: 257 DSGKSTLSGRLLHLLGRISKKDMHKNEKEAKEKGK 291
>03_05_0793 +
27755704-27756386,27756473-27757274,27757379-27757634,
27758355-27758566,27760494-27760709
Length = 722
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = -3
Query: 404 FFDTHHGLQTACNIRDSVFFAACLTSVMSDEPTTDLPICEQAFGDAGLCF 255
F + G ++ + ++FFA C +D TD P+C G G CF
Sbjct: 539 FLASPRGSHSSDTVIPTLFFAECC----NDNDITDEPLCWPIMGHPGRCF 584
>07_01_0733 + 5570084-5570282,5570395-5570600,5572484-5572624,
5572773-5572949,5573049-5573145,5573575-5573687,
5573774-5573896,5574004-5574075,5575340-5575432,
5575564-5575674,5575767-5575889,5576834-5576890,
5576939-5577022,5577140-5577214,5577418-5577554,
5577719-5577853,5579029-5579168,5579334-5579399,
5579732-5579838,5579910-5579990,5580064-5580138,
5580224-5580325,5581837-5582005,5582090-5582217,
5582596-5582679,5582779-5582879,5583729-5583882,
5583964-5584038,5584112-5584262,5584463-5585078,
5585427-5585487,5585874-5586019,5586104-5586287,
5586363-5586440,5586603-5586931,5587023-5587199,
5587571-5587667,5587742-5587897,5587962-5588198,
5588271-5588354,5588426-5588486,5588762-5588898
Length = 1912
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 365 IRDSVFFAACLTSVMSDEPTTDLPICEQAFGD 270
I+ S A C S +SDEP D+ C +A GD
Sbjct: 1456 IQGSELVALCHVSELSDEPVLDIHSCHKA-GD 1486
>02_05_0564 + 30003817-30005778
Length = 653
Score = 27.5 bits (58), Expect = 8.9
Identities = 7/16 (43%), Positives = 9/16 (56%)
Frame = -2
Query: 570 VCQYHHICRSSXQWWW 523
V Y H+C +WWW
Sbjct: 564 VLTYMHLCAEDWRWWW 579
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,041,395
Number of Sequences: 37544
Number of extensions: 318214
Number of successful extensions: 719
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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