Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30842
(616 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 66 1e-11
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 66 1e-11
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 66 1e-11
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 66 1e-11
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 40 0.002
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 39 0.002
At3g06470.1 68416.m00749 GNS1/SUR4 membrane family protein simil... 28 4.3
At5g16910.1 68418.m01982 cellulose synthase family protein simil... 28 5.7
At5g40720.1 68418.m04942 expressed protein contains Pfam profile... 27 7.5
At1g12380.1 68414.m01431 expressed protein 27 7.5
At5g02390.1 68418.m00162 expressed protein ; expression supporte... 27 9.9
At2g03360.1 68415.m00295 hypothetical protein contains Pfam doma... 27 9.9
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 66.5 bits (155), Expect = 1e-11
Identities = 30/35 (85%), Positives = 31/35 (88%)
Frame = +3
Query: 510 DSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 614
DSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K
Sbjct: 17 DSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK 51
Score = 33.1 bits (72), Expect = 0.15
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +1
Query: 463 MGKEKTHINIVVIGH 507
MGKEK HINIVVIGH
Sbjct: 1 MGKEKFHINIVVIGH 15
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 66.5 bits (155), Expect = 1e-11
Identities = 30/35 (85%), Positives = 31/35 (88%)
Frame = +3
Query: 510 DSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 614
DSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K
Sbjct: 17 DSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK 51
Score = 33.1 bits (72), Expect = 0.15
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +1
Query: 463 MGKEKTHINIVVIGH 507
MGKEK HINIVVIGH
Sbjct: 1 MGKEKFHINIVVIGH 15
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 66.5 bits (155), Expect = 1e-11
Identities = 30/35 (85%), Positives = 31/35 (88%)
Frame = +3
Query: 510 DSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 614
DSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K
Sbjct: 17 DSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK 51
Score = 33.1 bits (72), Expect = 0.15
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +1
Query: 463 MGKEKTHINIVVIGH 507
MGKEK HINIVVIGH
Sbjct: 1 MGKEKFHINIVVIGH 15
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 66.5 bits (155), Expect = 1e-11
Identities = 30/35 (85%), Positives = 31/35 (88%)
Frame = +3
Query: 510 DSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 614
DSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K
Sbjct: 17 DSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK 51
Score = 33.1 bits (72), Expect = 0.15
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +1
Query: 463 MGKEKTHINIVVIGH 507
MGKEK HINIVVIGH
Sbjct: 1 MGKEKFHINIVVIGH 15
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = +3
Query: 510 DSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 614
DSGKST +G L++ G I ++ + K+EKEA+ GK
Sbjct: 249 DSGKSTLSGRLLHLLGRISQKQMHKYEKEAKLQGK 283
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 39.1 bits (87), Expect = 0.002
Identities = 15/35 (42%), Positives = 25/35 (71%)
Frame = +3
Query: 510 DSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 614
D+GKST G +++ G +D R I+K+EKEA++ +
Sbjct: 111 DAGKSTIGGQILFLSGQVDDRQIQKYEKEAKDKSR 145
>At3g06470.1 68416.m00749 GNS1/SUR4 membrane family protein similar
to SP|P39540 Elongation of fatty acids protein 1
{Saccharomyces cerevisiae}; contains Pfam profile
PF01151: GNS1/SUR4 family
Length = 278
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 307 VGSSLMTDVKHAAKKTLSRILHAVCNP 387
VG +L HA+ ++R LHA+C P
Sbjct: 85 VGCTLSITSSHASSDPMARFLHAICFP 111
>At5g16910.1 68418.m01982 cellulose synthase family protein similar
to gi:2827143 cellulose synthase catalytic subunit,
Arabidopsis thaliana, gi:9622886 cellulose synthase-7
from Zea mays
Length = 1145
Score = 27.9 bits (59), Expect = 5.7
Identities = 20/55 (36%), Positives = 24/55 (43%)
Frame = -3
Query: 419 LHKTIFFDTHHGLQTACNIRDSVFFAACLTSVMSDEPTTDLPICEQAFGDAGLCF 255
+HK I + +H Q A + S C VMSDE DL CE F CF
Sbjct: 107 MHKVIETEPNHP-QMAGSKGSSCAIPGCDAKVMSDERGQDLLPCECDFKICRDCF 160
>At5g40720.1 68418.m04942 expressed protein contains Pfam profile
PF01697: Domain of unknown function
Length = 583
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -2
Query: 582 SRWYVCQYHHICRSSXQWWWTCRSRVSDDDNVNV 481
SRW V Y+ + +W W V DDDN V
Sbjct: 145 SRWRVDDYNLQVGLTHRWDWLVYDAVIDDDNSTV 178
>At1g12380.1 68414.m01431 expressed protein
Length = 793
Score = 27.5 bits (58), Expect = 7.5
Identities = 28/103 (27%), Positives = 48/103 (46%)
Frame = +3
Query: 216 SSSPGCTSIVSYSETKTRIAKSLLAYRQVRRWLITHD*CQARSEENAISDITRSL*SVVS 395
+S C IVS + KT+ ++L + Q W++ CQ + + I D + L S
Sbjct: 363 NSPQRCVGIVS-DKFKTKALRNLESQHQ---WMVNLS-CQFQGLNSLIKDFVKELPLFKS 417
Query: 396 VKKNCFVK*KSEINIPITPLTKNGQGKDSH*HCRHRTRDSGKS 524
V +NC V+ IN T +N HC+++ ++ G+S
Sbjct: 418 VSQNC-VRLAKFIN--NTAQIRNA-------HCKYQLQEHGES 450
>At5g02390.1 68418.m00162 expressed protein ; expression supported
by MPSS
Length = 835
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/21 (57%), Positives = 16/21 (76%), Gaps = 2/21 (9%)
Frame = -2
Query: 270 CGSLFRYMKLY--SYNQETKN 214
CGSL RY++LY S+ +E KN
Sbjct: 481 CGSLDRYLQLYECSFQREAKN 501
>At2g03360.1 68415.m00295 hypothetical protein contains Pfam domain,
PF04577: Protein of unknown function (DUF563)
Length = 393
Score = 27.1 bits (57), Expect = 9.9
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Frame = -3
Query: 452 WSYGYIDF--TFSLHKTIFFDTHHGLQTAC 369
W YID TFS HKTI D + T C
Sbjct: 137 WMPKYIDILGTFSKHKTILLDKENASITHC 166
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,975,345
Number of Sequences: 28952
Number of extensions: 260390
Number of successful extensions: 516
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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