Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30841
(741 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0) 156 2e-38
SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037) 31 1.3
SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5) 30 2.3
SB_58902| Best HMM Match : TNFR_c6 (HMM E-Value=0.032) 29 3.0
SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35) 29 3.0
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_8061| Best HMM Match : Homeobox (HMM E-Value=5.1e-27) 29 4.0
SB_54185| Best HMM Match : Gal_Lectin (HMM E-Value=2.3) 29 5.2
SB_50413| Best HMM Match : GRP (HMM E-Value=0.15) 29 5.2
SB_43606| Best HMM Match : Y_phosphatase (HMM E-Value=3.9e-26) 29 5.2
SB_52622| Best HMM Match : Ank (HMM E-Value=1.2e-05) 28 9.1
SB_25361| Best HMM Match : Cadherin (HMM E-Value=0) 28 9.1
>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
Length = 328
Score = 156 bits (378), Expect = 2e-38
Identities = 72/87 (82%), Positives = 78/87 (89%)
Frame = +2
Query: 248 PRYVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 427
P V VIS+RP+GQRA+LK+A+HTGATPIAGRFTPG FTNQIQAAFREPRLLIV DP D
Sbjct: 71 PADVCVISARPYGQRAILKYASHTGATPIAGRFTPGTFTNQIQAAFREPRLLIVCDPRID 130
Query: 428 HQPITEASYVNIPVIALCNTDSPLRFV 508
HQP+TEASYVNIPVIA CNTDSPLR V
Sbjct: 131 HQPVTEASYVNIPVIAFCNTDSPLRHV 157
Score = 111 bits (266), Expect = 8e-25
Identities = 49/72 (68%), Positives = 60/72 (83%)
Frame = +3
Query: 39 MSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVL 218
MSGGLD+L L EEDV K LAA HLGA N +FQME YVYKR++DG ++IN+++TWEKL+L
Sbjct: 1 MSGGLDILQLKEEDVVKFLAAGVHLGANNCDFQMEDYVYKRKSDGVNIINVKKTWEKLLL 60
Query: 219 AARAVVAIENPA 254
AAR +V IENPA
Sbjct: 61 AARIIVTIENPA 72
Score = 96.7 bits (230), Expect = 2e-20
Identities = 41/65 (63%), Positives = 52/65 (80%)
Frame = +1
Query: 493 PTKICDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEK 672
P + D+AIPCN K HSIGLM+WLLAREVLR+RG + R W+++ DL+FYRDPEE+EK
Sbjct: 153 PLRHVDVAIPCNNKGIHSIGLMFWLLAREVLRMRGSISRALPWEIMPDLYFYRDPEEAEK 212
Query: 673 DEQQA 687
+EQ A
Sbjct: 213 EEQAA 217
>SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)
Length = 432
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 410 LDPAQDHQPITEASYVNIPVIALCNTDSPLRF 505
LDP +HQPIT+ + I ++A TD+PL+F
Sbjct: 119 LDPDVEHQPITDRAEACICLVA---TDAPLKF 147
>SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 965
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = -3
Query: 484 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLNLVSKSTWCETPRNRRST 320
V SN +V + N + CR Q NQ T FT + ++ C+T RN RS+
Sbjct: 876 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMRSS 930
>SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)
Length = 315
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 541 HSIGLMWWLLAREVLRLRGVLP 606
H G +WW+L E LR + VLP
Sbjct: 46 HDDGSVWWVLTSESLRAKAVLP 67
>SB_58902| Best HMM Match : TNFR_c6 (HMM E-Value=0.032)
Length = 397
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = +1
Query: 391 TSSLDCIGPCTRPSTHY*SFICQHSCDCFVQHRL---PTKICDIAIPC 525
TSSLD + PC+ S H+ + + C C+ +++ K C I PC
Sbjct: 331 TSSLDTLAPCSF-SCHFACDVNTNQCICYYGYQMSDNKCKACTINEPC 377
>SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)
Length = 1772
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -2
Query: 638 KSTTTSQRWSRGSTPRSLNTSRANNHHIKPIEWEDLVLHGIAMS 507
K+TT RWS+G TP ++ H I L+ HG S
Sbjct: 1396 KTTTDKTRWSKGQTPNGKVAQKSKFQH--GIAGTQLIYHGTGPS 1437
>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 29.1 bits (62), Expect = 4.0
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +1
Query: 334 CGAFHTRCFY*PDSSCIP*TSSLDCIGPCTRPSTHY*SFICQHSCDCFVQHRLPTKICDI 513
C H+ C SSCI S+ DCI C+ PS F C+ +C T++C+
Sbjct: 866 CKKCHSSC-----SSCIG-PSANDCI-TCSDPSNALIGFTCKANCTPGQFKNTATRVCEN 918
Query: 514 AIP-CNTKSS 540
P C + SS
Sbjct: 919 CHPTCASCSS 928
>SB_8061| Best HMM Match : Homeobox (HMM E-Value=5.1e-27)
Length = 418
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -3
Query: 643 RTNQPQHPSAGHGEA-HHEASTLHVPTTTTSNQ*SGKTWCC 524
R QP H ++ + A HH A LH P +TS + W C
Sbjct: 176 RDGQPCHGASMNNFAYHHAADFLHYPPVSTSYMPAHPYWTC 216
>SB_54185| Best HMM Match : Gal_Lectin (HMM E-Value=2.3)
Length = 225
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -3
Query: 484 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLNLVSKSTWCETPRNRR 326
V SN +V + N + CR Q NQ T FT + ++ C+T RN R
Sbjct: 155 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMR 207
>SB_50413| Best HMM Match : GRP (HMM E-Value=0.15)
Length = 487
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -1
Query: 651 TVEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVGR-LGVAWDSNVT 505
+V Q+ + P +T HT+ T P HQ + +GR G DSNV+
Sbjct: 241 SVTNQMRGHEPRSITYNHTSITAPLTTGYPDHQGSYMGRYAGSVADSNVS 290
>SB_43606| Best HMM Match : Y_phosphatase (HMM E-Value=3.9e-26)
Length = 280
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -3
Query: 484 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLNLVSKSTWCETPRNRR 326
V SN +V + N + CR Q NQ T FT + ++ C+T RN R
Sbjct: 196 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMR 248
>SB_52622| Best HMM Match : Ank (HMM E-Value=1.2e-05)
Length = 402
Score = 27.9 bits (59), Expect = 9.1
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 3/82 (3%)
Frame = +1
Query: 457 QHSCDCFVQHRLPTKIC--DIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVV 630
+ C+ + K+C DI PC +S + ++ L E R R + + RW
Sbjct: 306 ERKCEAIFNQKSNNKLCFTDIPWPCEGTASEMLKMLTKFLYNEQDRKRRLREQQVRWH-- 363
Query: 631 VDLFFYRDPEE-SEKDEQQAKE 693
D F R E E+D + E
Sbjct: 364 PDRFLQRCGERLDERDRDKVVE 385
>SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 4833
Score = 27.9 bits (59), Expect = 9.1
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Frame = +2
Query: 269 SSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAA----FREPRLLIVLDPAQDHQP 436
S + GQ ++K++ G +A F + T ++ A F +L + AQDH
Sbjct: 1179 SDKDIGQNGLIKYSISNGN--LAAMFDVESATGRLIVAKSLDFETTQLYELTITAQDHGL 1236
Query: 437 ITEASYVNIPVIAL-CNTDSPL 499
I +S VN+ V L N ++PL
Sbjct: 1237 IPLSSTVNVTVNVLDVNDNAPL 1258
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,278,365
Number of Sequences: 59808
Number of extensions: 592869
Number of successful extensions: 1641
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1636
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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