Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30838
         (785 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    25   0.91 
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   2.8  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    23   3.7  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = +3

Query: 402 CDVENASCKDAWL 440
           CDVE  SCKDA L
Sbjct: 134 CDVEMVSCKDAAL 146



 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 348 SNGAPCEAKLLSHQNLEPCDVENASCKD 431
           +NG  CE   ++  +  PC   +A C+D
Sbjct: 407 TNGTNCEIDTINECDSNPCKHLDAICQD 434


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +2

Query: 104 IFFLKCIYHLYLMKILTYTGRYHC 175
           + FL CIY+ Y   I+     Y C
Sbjct: 279 LLFLLCIYYFYCALIILLCIYYFC 302



 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 104 IFFLKCIYHLYLMKIL 151
           +FFL CIY+ Y   I+
Sbjct: 140 LFFLLCIYYFYCAFII 155


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = -2

Query: 349 LCMSKIGLFVLHIILSERCWRQLLRSSSFSEIIYFSPSLL 230
           LC++  GL  ++ + SE+C    L  S +S+ +++S  ++
Sbjct: 202 LCLTTFGLLPVNGVTSEKC---NLTFSWYSKKVFYSKIII 238


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,172
Number of Sequences: 336
Number of extensions: 4341
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21272645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)