Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30838
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    31   0.25 
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    31   0.25 
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    28   1.7  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    26   5.3  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    26   5.3  
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po...    26   7.0  

>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +1

Query: 70   LIYVKARVTENYFLFEMHIPLVSNEDFNLYRAIPLPVKNNESYAYM 207
            L+ ++    ENY L + HI +++   F   RAI +PVK     A++
Sbjct: 2547 LLIIRVVSKENYSLIKPHISILAPAIFGCVRAIVIPVKLAAEAAFL 2592


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
 Frame = -2

Query: 457 FDACNSSHASLHDAFS-TSQGSRF*CDSSFASHGAPLLCMSKIGLFVLHIILSERCWRQL 281
           FD  N     +H  F  T Q S F CD       A L   S +GLF+L +     C+ + 
Sbjct: 93  FDLSNFHSQIIHLRFKGTRQQSEFFCDRLVRQLHASLEDASSVGLFLLSLASERVCFSES 152

Query: 280 LRSSSFSEI 254
             S     I
Sbjct: 153 ANSQEIESI 161


>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -2

Query: 331 GLFVLHIILSERCWRQLLRSSSFSEIIYFSPSLLRYISMKFAYMRSFHCFS 179
           GL +  I+L++     LL ++ FS +I F    L      F Y+   +CF+
Sbjct: 160 GLLLWSIVLAKPEKNMLLSAAIFSALICFKHIFLYVAPAYFVYLLRVYCFT 210


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 82  SHISTCRDPLYLLCSFLRVKISLS 11
           S IS C+  LY  C++ +V +SLS
Sbjct: 426 SFISVCKKHLYPTCNYQQVLVSLS 449


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
 Frame = -2

Query: 283  LLRSSSFSEIIYFSPSLLRYISMK-FAYMRSFHCFSQAMVSPCIS*NLH*IQVVYAFQKE 107
            +LR  S S +IY +P ++R  SM+ F  ++     +Q +V   +S        +Y    E
Sbjct: 804  VLRQLSLS-LIYENPDVVRKSSMRLFNTLQKNGLATQLLV--LLSQKYS--TCIYDVTDE 858

Query: 106  NSFR*PAPSHISTCRDPLYLLCSFLRVKISLSEFF 2
            NS      S    C D LYLL  FL +  S   ++
Sbjct: 859  NSHLKLISSLQDECSDVLYLLMEFLNMVCSPKSYY 893


>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -2

Query: 469 TSHLFDACNSSHASLHDAFSTSQGSRF*CDSSFASHGA 356
           T H+FD  +    ++HD +   Q +     S   SHG+
Sbjct: 23  TKHIFDEISVKEVAVHDIWKRIQAADSQIQSYIKSHGS 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,299,788
Number of Sequences: 5004
Number of extensions: 71273
Number of successful extensions: 204
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)