Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30838
         (785 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0515 + 10121849-10122149,10132151-10132187,10132314-101327...    29   4.2  
09_04_0175 - 15353903-15354005,15354189-15354280,15354408-153545...    29   5.5  
07_01_0130 - 963856-965454                                             29   5.5  
12_01_1018 - 10386308-10386416,10386597-10386932,10387143-10387477     28   9.7  
05_01_0251 + 1901709-1901864,1901968-1901999,1902534-1902664,190...    28   9.7  

>09_02_0515 +
           10121849-10122149,10132151-10132187,10132314-10132790,
           10133184-10133733
          Length = 454

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +2

Query: 611 YNSRVKLDYEIASTTLDNSVNKIVNLTYNYTPNLFQSTARETKIITKEI 757
           +NS  K  Y++ +  L N  +KIV + Y  T N+   T  + K  T  I
Sbjct: 4   HNSSEKKAYKVVAGDLANGESKIVRINYINTSNVLAVTLGDLKTSTSLI 52


>09_04_0175 -
           15353903-15354005,15354189-15354280,15354408-15354553,
           15354661-15354814,15354885-15354985,15355055-15355145,
           15355146-15355378,15355501-15355736,15355839-15356066,
           15356150-15356370,15356869-15356990,15357125-15357451,
           15357616-15357754,15357822-15357901,15358478-15358678,
           15359431-15359757,15360144-15360897
          Length = 1184

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = +1

Query: 112 FEMHIPLVSNEDFNLYRAIPLPVKNNESYAYMRTSSKYIA 231
           FE+H+  V +EDF+  +   + V+ NES ++   S+ YIA
Sbjct: 603 FEVHV--VQDEDFSTVQNDIISVRENESVSFDVLSNDYIA 640


>07_01_0130 - 963856-965454
          Length = 532

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +2

Query: 473 MLRYVYFTHHMQSDVSSHTMTSSGIVSLPQGCVLQSNDLTIYAHNR 610
           M+  VYF H +  + +   M  + + SL Q    + N L+++AH R
Sbjct: 372 MMFNVYFDHELYKNFTGPFMDLNIMASLIQATFYEGNWLSLHAHTR 417


>12_01_1018 - 10386308-10386416,10386597-10386932,10387143-10387477
          Length = 259

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = +1

Query: 43  KEDIKDLYTLI-YVKARVTENYFLFEMHIPLVSNEDFNLYRAIPLPVKNNESYAYMRTSS 219
           +EDI++ + L  + +A   + + L E H P+V  +D  L +    PV   +  A    ++
Sbjct: 29  QEDIEEAFALAEHEQANAEQAHVLAEQHNPVVEQQDDALAKQNNNPVVEQQGDALAEQNN 88

Query: 220 KYIAVNLEKN 249
             +    E+N
Sbjct: 89  NPVVEQQEQN 98


>05_01_0251 +
           1901709-1901864,1901968-1901999,1902534-1902664,
           1902740-1902821,1902928-1903054,1903369-1903686,
           1903785-1903846,1903988-1904074,1904139-1904195,
           1906113-1906197,1906916-1907185,1908158-1908254,
           1908390-1908436,1908826-1908939,1909024-1909117,
           1909360-1909457,1910356-1910455,1911445-1911521,
           1911824-1913122
          Length = 1110

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/56 (25%), Positives = 31/56 (55%)
 Frame = +2

Query: 566 CVLQSNDLTIYAHNRYNSRVKLDYEIASTTLDNSVNKIVNLTYNYTPNLFQSTARE 733
           C L    L++YA   + ++VK++ ++  + ++ SV  + +   N  P L ++T +E
Sbjct: 412 CFLILFRLSLYAGFYWYTKVKVEDDVEGSGINASVGDLRDAAVNPQPALLRATVKE 467


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,165,130
Number of Sequences: 37544
Number of extensions: 413863
Number of successful extensions: 991
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)