Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30838
(785 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3516| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.46
SB_56969| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_10898| Best HMM Match : Galactosyl_T (HMM E-Value=1.9e-22) 29 3.2
SB_41834| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0) 29 4.3
SB_32582| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_50684| Best HMM Match : Toxin_trans (HMM E-Value=4.8) 29 5.6
SB_24034| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_35013| Best HMM Match : Exo_endo_phos (HMM E-Value=0.027) 28 7.5
SB_54605| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
SB_31555| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 28 9.9
>SB_3516| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 32.3 bits (70), Expect = 0.46
Identities = 16/62 (25%), Positives = 32/62 (51%)
Frame = -3
Query: 417 RSRRHRARGFDVTAVSLRMELRCYACQK*VYLFCI*FYLNVVGDSS*DHLHLAKLYIFLQ 238
++R H+A+ ++ T + LR+ +R C L C F ++V+G + H ++ L
Sbjct: 213 KNREHKAQSYEHTTIELRIHIRISICAPFGTLLCFLFDVHVMG----AYFHQRLSHVLLL 268
Query: 237 VY 232
+Y
Sbjct: 269 IY 270
>SB_56969| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 82
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/61 (31%), Positives = 31/61 (50%)
Frame = +3
Query: 264 NEDDLKSCLQQRSDKIICKTNKPIFDMHSNGAPCEAKLLSHQNLEPCDVENASCKDAWLE 443
+E+D QQ KII ++P+F++ + P +L PCD N+SC+ + E
Sbjct: 6 SEEDFDDLCQQIQKKIIDGKSRPMFEI-AKDRPQHWPVLEIPT-RPCDELNSSCQSDFTE 63
Query: 444 L 446
L
Sbjct: 64 L 64
>SB_10898| Best HMM Match : Galactosyl_T (HMM E-Value=1.9e-22)
Length = 301
Score = 29.5 bits (63), Expect = 3.2
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 180 HRQWYRPV*VKIFIRYKWYMHFKKKIV 100
+ + YR + VK+F +KW + FK K +
Sbjct: 153 YEETYRNIVVKVFYAFKWALQFKPKYI 179
>SB_41834| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)
Length = 296
Score = 29.1 bits (62), Expect = 4.3
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Frame = +2
Query: 485 VYFTHHMQSDVSSHTMTSSGIVSLPQGCVLQSNDLTIYAHNRYNSRVKLDYEIASTT--L 658
+Y+T H DV + GI +P+ V + A+ S+ K Y +
Sbjct: 32 LYYTQHQIKDVVKYA-ARLGIRVIPEIDVPGHATAILTAYPELGSKDKYTYTLQRNAGIF 90
Query: 659 DNSVNKIVNLTYNYTPNLF 715
D ++N ++ TY + NLF
Sbjct: 91 DPTLNPTIDKTYEFLENLF 109
>SB_32582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1151
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 210 NFIEIYRSKLGEKYIISLNEDDLKSCLQQRSD 305
NFI + R + G+KY + E D+ L+Q+ +
Sbjct: 26 NFISVTRKRFGDKYKLLSEESDIYPILKQQEE 57
>SB_50684| Best HMM Match : Toxin_trans (HMM E-Value=4.8)
Length = 346
Score = 28.7 bits (61), Expect = 5.6
Identities = 17/70 (24%), Positives = 29/70 (41%)
Frame = -2
Query: 466 SHLFDACNSSHASLHDAFSTSQGSRF*CDSSFASHGAPLLCMSKIGLFVLHIILSERCWR 287
+++ D C AS +D S F D +H PL C +KIG + + W+
Sbjct: 245 NYIVDLCKKGRAS-YDVLYDEAVSHFDSDDPSNAHN-PLNCETKIGFRYIDKEDLRKAWQ 302
Query: 286 QLLRSSSFSE 257
++ F +
Sbjct: 303 EMAEKDGFQQ 312
>SB_24034| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 244
Score = 28.7 bits (61), Expect = 5.6
Identities = 17/70 (24%), Positives = 29/70 (41%)
Frame = -2
Query: 466 SHLFDACNSSHASLHDAFSTSQGSRF*CDSSFASHGAPLLCMSKIGLFVLHIILSERCWR 287
+++ D C AS +D S F D +H PL C +KIG + + W+
Sbjct: 87 NYIVDLCKKGRAS-YDVLYDEAVSHFDSDDPSNAHN-PLNCETKIGFRYIDKEDLRKAWQ 144
Query: 286 QLLRSSSFSE 257
++ F +
Sbjct: 145 EMAEKDGFQQ 154
>SB_35013| Best HMM Match : Exo_endo_phos (HMM E-Value=0.027)
Length = 381
Score = 28.3 bits (60), Expect = 7.5
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = -2
Query: 763 VSNLFSDNFCFTCCRLEQ 710
++N F++ FCF CC L++
Sbjct: 364 IANAFNEFFCFRCCHLQK 381
>SB_54605| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 911
Score = 27.9 bits (59), Expect = 9.9
Identities = 19/90 (21%), Positives = 44/90 (48%)
Frame = +2
Query: 428 GRVA*VTCIEQVARHMLRYVYFTHHMQSDVSSHTMTSSGIVSLPQGCVLQSNDLTIYAHN 607
GR A V C +++ ++ ++ V T+ S + + C+ S++L ++ HN
Sbjct: 60 GRTAGVICSQKLPDLVVNVEELGNNEHYRVEQMTLGSL-TCAYEENCLSSSSNL-LWEHN 117
Query: 608 RYNSRVKLDYEIASTTLDNSVNKIVNLTYN 697
+ + R L ++ S T+D + ++++N
Sbjct: 118 KDSYRTLLPSQVESRTVDLQTLDLTSISHN 147
>SB_31555| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 1063
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/49 (26%), Positives = 21/49 (42%)
Frame = +1
Query: 322 QINLFLTCIATELHAKRNCCHIKTSSPVTSRTRHARTRGLSYMHRTSGS 468
+++ +T + R+CCH+ S TR + Y RT GS
Sbjct: 644 RVSCHVTMVTAAQPGTRDCCHVAIVSVTQPGTRDCCHGTIVYQARTQGS 692
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,528,753
Number of Sequences: 59808
Number of extensions: 547911
Number of successful extensions: 1562
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1555
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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