Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30838
         (785 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70783-10|CAC70122.1| 1037|Caenorhabditis elegans Hypothetical p...    33   0.31 
Z81051-10|CAE17730.1|  206|Caenorhabditis elegans Hypothetical p...    29   3.8  
Z78014-2|CAB01429.1|  122|Caenorhabditis elegans Hypothetical pr...    28   8.7  
Z46242-14|CAA86324.2|  442|Caenorhabditis elegans Hypothetical p...    28   8.7  

>Z70783-10|CAC70122.1| 1037|Caenorhabditis elegans Hypothetical
           protein ZK856.13 protein.
          Length = 1037

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 271 SSFSEIIYFSPSLLRYISMKFAYMRSFHCFSQAMVSP 161
           S+F  ++YF     R  ++ F Y+R FH FS A+  P
Sbjct: 795 STFQNLVYFCAIKARCWNLAFEYVRFFHTFSLAVSDP 831


>Z81051-10|CAE17730.1|  206|Caenorhabditis elegans Hypothetical
           protein C55A6.11 protein.
          Length = 206

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 382 HIKTSSPVTSRTRHARTRGLSYMHRTSG 465
           ++  S P+ SRTRH   R   Y + TSG
Sbjct: 27  NVNVSCPILSRTRHKELRTFMYKNCTSG 54


>Z78014-2|CAB01429.1|  122|Caenorhabditis elegans Hypothetical
           protein F42E8.2 protein.
          Length = 122

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +3

Query: 324 NKPIFDMHSNGAPCEAKLLSHQNLEPCDVENASCKDAWLELHASN 458
           +K +    + GAP + KL+ H    P D  +A C  +    H SN
Sbjct: 66  SKDVVITRTAGAPKDDKLVIHFAPAPADATDACCSHSCWNCHHSN 110


>Z46242-14|CAA86324.2|  442|Caenorhabditis elegans Hypothetical
           protein F35G12.1a protein.
          Length = 442

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = +1

Query: 124 IPLVSNEDFN---LYRAIPLPVKNNESYAYMRTSSKYIAVNLEKNI 252
           + LV+N   N   L  AI L  KN++ Y  +RTS+    VNL K+I
Sbjct: 57  VDLVTNYGVNKEALNHAISLYSKNDQMYPEVRTSATASYVNLIKSI 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,259,005
Number of Sequences: 27780
Number of extensions: 401155
Number of successful extensions: 1038
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)