Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30838
         (785 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g03450.1 68415.m00303 purple acid phosphatase (PAP9) identica...    29   2.6  
At1g69190.1 68414.m07919 dihydropterin pyrophosphokinase, putati...    29   2.6  
At4g30000.1 68417.m04268 dihydropterin pyrophosphokinase, putati...    29   4.6  
At3g55920.1 68416.m06214 peptidyl-prolyl cis-trans isomerase, pu...    28   8.1  

>At2g03450.1 68415.m00303 purple acid phosphatase (PAP9) identical
           to purple acid phosphatase [Arabidopsis thaliana]
           GI:20257481; contains Pfam profile: PF00149
           calcineurin-like phosphoesterase; contains
           metallo-phosphoesterase motif (PS50185)
          Length = 651

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
 Frame = +3

Query: 234 KLGEKYIISLNEDDLKSCLQQRSDKIICKTNKPIFDMHSN--GAPCEAKLLSHQNLEPCD 407
           K G++Y  S  + DL+S  + ++  ++ + ++P++        A    K++ H  LEP  
Sbjct: 416 KGGKQY--SFLKSDLESVNRSKTPFVVVQGHRPMYTTSRKIRDAAIREKMIEH--LEPLL 471

Query: 408 VENASCKDAWLELHASNKWLVICCDTC 488
           V+N      W  +H   ++  I  +TC
Sbjct: 472 VKNNVTVALWGHVHRYERFCAISNNTC 498


>At1g69190.1 68414.m07919 dihydropterin pyrophosphokinase, putative
           / dihydropteroate synthase, putative / DHPS, putative
           similar to dihydropterin pyrophosphokinase
           /dihydropteroate synthase [Pisum sativum]
           gi|1934972|emb|CAA69903
          Length = 459

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +3

Query: 288 LQQRSDKIICKTNKPIFDMHSNGAPCEAKLLSHQNLEPCDVENASCKDAWLELH 449
           L +   K++  ++ P   MH  G PC   + + +NLE     N  CKD   EL+
Sbjct: 287 LDENMHKVVADSDVPYMIMHMRGDPC--TMQNKENLE----YNEICKDVATELY 334


>At4g30000.1 68417.m04268 dihydropterin pyrophosphokinase, putative
           / dihydropteroate synthase, putative / DHPS, putative
           similar to dihydropterin pyrophosphokinase
           /dihydropteroate synthase [Pisum sativum]
           gi|1934972|emb|CAA69903
          Length = 554

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +3

Query: 288 LQQRSDKIICKTNKPIFDMHSNGAPCEAKLLSHQNLEPCDVENASCKDAWLELH 449
           L     K++ ++  P   MH  G PC   + + +NL+  DV    CKD   EL+
Sbjct: 383 LDPNMHKVVAESGVPYMAMHMRGDPC--TMQNKENLQYDDV----CKDVASELY 430


>At3g55920.1 68416.m06214 peptidyl-prolyl cis-trans isomerase,
           putative / cyclophilin, putative / rotamase, putative
           similar to cyclophilin [Arabidopsis thaliana]
           gi|2443755|gb|AAB71401
          Length = 228

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +3

Query: 258 SLNEDDLKSCLQQRSDKIICKTNKPIFDMHSNGAPCEAKLLS-HQNLEPCDVEN 416
           S+NE  L + L Q  + +   T+K  FD+  NG+P    L+    N+ P   EN
Sbjct: 37  SVNEKILDAKLNQVGEDLEGVTHKVYFDIQINGSPAGRILIGLFGNIVPKTAEN 90


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,751,241
Number of Sequences: 28952
Number of extensions: 352364
Number of successful extensions: 973
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)