Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30836
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    29   0.69 
SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr 1|||...    26   4.9  
SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr 2|...    26   4.9  
SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom...    25   8.5  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    25   8.5  

>SPCC417.08 |tef3||translation elongation factor
            eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 29.1 bits (62), Expect = 0.69
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +2

Query: 179  IKKAREAGSGQINPCIRKDINKVVDLLTLRI*LRRHPFAD--AGGVKIGLIVMVVTVL 346
            + +A    SGQ  P +RK+I +   LL L   L  H      +GG K+ L++   T L
Sbjct: 863  VDRAEALKSGQFRPLVRKEIEEHCSLLGLDAELVSHSRIKGLSGGQKVKLVLAACTWL 920


>SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 356

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -3

Query: 334 YHHNKANFYSSSICKGMPSQ-LYPQ 263
           Y H  A  YSS+ C G+PS  L PQ
Sbjct: 306 YSHRTAEGYSSNSCLGIPSYFLNPQ 330


>SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -3

Query: 334 YHHNKANFYSSSICKGMPSQ-LYPQ 263
           Y H  A  YSS+ C G+PS  L PQ
Sbjct: 306 YSHRTAEGYSSNSCLGIPSYFLNPQ 330


>SPAC6F12.13c |fps1||geranyltranstransferase
           Fps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 44  IPNYLSSLPIPDSVGGWFR 100
           I NYL ++ IPD V  W++
Sbjct: 21  IVNYLKTINIPDDVTEWYK 39


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +2

Query: 140 VVVGGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDLLTLRI*LRRH 286
           VV+G    Y Y+ +    +   GQ+  CI  +  K+V L  +R   R H
Sbjct: 689 VVLGDHIAYRYEVVDFLGKGSFGQVLRCIDYETGKLVALKIIRNKKRFH 737


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,986,080
Number of Sequences: 5004
Number of extensions: 62993
Number of successful extensions: 132
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)