Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30836
         (738 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51720.1 68418.m06414 expressed protein                             57   1e-08
At5g27890.1 68418.m03347 expressed protein                             31   1.1  

>At5g51720.1 68418.m06414 expressed protein
          Length = 108

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 20/33 (60%), Positives = 25/33 (75%)
 Frame = +1

Query: 292 CRCWRSKNWPYCDGSHGPHNKETGDNTGPVVVR 390
           CRCWRS  +P CDGSH  HNK  GDN GP++++
Sbjct: 74  CRCWRSGTFPLCDGSHVKHNKANGDNVGPLLLK 106



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/42 (42%), Positives = 22/42 (52%)
 Frame = +2

Query: 128 IPPTVVVGGISYYSYQTIKKAREAGSGQINPCIRKDINKVVD 253
           +P   V GG      Q +   R  G G INP IRK+ +KVVD
Sbjct: 18  LPFKPVTGGEVGRKQQRMVVVRAEGGGGINPEIRKNEDKVVD 59


>At5g27890.1 68418.m03347 expressed protein
          Length = 399

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 159 DIPPTTTVGGISANQSLTPRRNHPPTESGIGKLDR 55
           D  P    GGISA+ +    R+H P+ S +GK  R
Sbjct: 154 DFRPRGAFGGISASLAAVRTRDHSPSSSEMGKASR 188


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,130,377
Number of Sequences: 28952
Number of extensions: 315093
Number of successful extensions: 666
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)