Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30835
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy...   107   2e-24
SPAC4G8.11c |atp10||F1-F0 ATPase assembly protein|Schizosaccharo...    27   2.7  
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    27   3.6  
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    26   4.7  
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    26   6.3  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    25   8.3  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    25   8.3  

>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 327

 Score =  107 bits (256), Expect = 2e-24
 Identities = 48/84 (57%), Positives = 63/84 (75%)
 Frame = +3

Query: 258 WPLVQKILSEHHIVAELDLIEGSLTVKTTRKTWDPYIIIKARDFMKLLSRSVPFEQASRV 437
           WP V + L +  I   LDL+EGS+TVKTTRKT+DPY I+ ARD +KLL+RSVPF QA ++
Sbjct: 70  WPHVTRALDKFGITCVLDLVEGSMTVKTTRKTFDPYSILDARDLIKLLARSVPFPQAVKI 129

Query: 438 LDDEIGCDIIKINSFVRKKETFLK 509
           + D + CDIIKI + +R KE F+K
Sbjct: 130 MQDGVACDIIKIGNILRNKERFVK 153



 Score =  101 bits (243), Expect = 8e-23
 Identities = 49/82 (59%), Positives = 61/82 (74%), Gaps = 1/82 (1%)
 Frame = +2

Query: 479 ICSQKRNLFERRQRLIGPQGVTLKSIELLTECYVLVQGNTVSAVGPYKGLVQVRRIVEDT 658
           I   K    +RRQRLIG  G TLK++ELLT+CY+LVQG TV+ +G YKGL +VRRIVED 
Sbjct: 144 ILRNKERFVKRRQRLIGTNGQTLKALELLTQCYILVQGTTVAVMGGYKGLKEVRRIVEDC 203

Query: 659 MKNIHPMYNIKS*WLK-EIMKD 721
           M NIHP+Y+IK   +K E+ KD
Sbjct: 204 MHNIHPIYHIKELMIKRELAKD 225



 Score = 55.2 bits (127), Expect = 9e-09
 Identities = 26/48 (54%), Positives = 34/48 (70%)
 Frame = +1

Query: 121 ETNSVDNAWAMKIPKFTPDDNPHGLLEESKFATLFPKYREQYLKDAGP 264
           +T+ +D+ W  KI  FT DD+    LEES FATLFPKYRE+YL++  P
Sbjct: 27  DTDDIDH-W--KIEPFTKDDSKESFLEESSFATLFPKYREKYLREVWP 71


>SPAC4G8.11c |atp10||F1-F0 ATPase assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +3

Query: 222 ISKVSRAIPERCW 260
           I KV R+IPE+CW
Sbjct: 191 IGKVKRSIPEKCW 203


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1064

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +3

Query: 180  QPAWPFRRK*IRHIISKVSRAIPERCWPLVQKILSEHHIVAE-LDLIEGSLTV 335
            Q  WP   K +R  +++V +A+P      V++      +V + ++L+EG L +
Sbjct: 890  QADWPVLGKKLRKDMARVKKALPNVTSEEVKEFQKNKKMVLDGIELVEGDLQI 942


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = -1

Query: 275 FLYQGPASFRYCSRYFGNNVANLLSSKRPCGLSSGVNLGIFIAQALS--TELVSSTSILV 102
           +LY+   S  +   YF  + +  +   +P     G+N  I +  + S  T L+SST  L 
Sbjct: 103 YLYESTNSSNWVRTYFQKDFSQTVDDLKPLLSELGLNYEIELPNSFSNLTSLLSSTFQLC 162

Query: 101 F 99
           F
Sbjct: 163 F 163


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 73  SLLATLHLIKTNMEVEETNSVDNAWAMKIP 162
           S L TL  I    +  ET   ++AW  KIP
Sbjct: 221 SNLVTLSKIMRQADASETGGQNSAWKQKIP 250


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 142 AWAMKIPKFTPDDNPHGLL 198
           AW    P  TPD +P GLL
Sbjct: 553 AWGFMCPVHTPDGSPCGLL 571


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +2

Query: 521 LIGPQGVTLKSIELLTECYVLVQGNTVSAVGPYKGLVQVRRIVEDTM 661
           LIGP+G TLK +E  +   + ++G      G  +    VR  +E+ +
Sbjct: 206 LIGPRGHTLKDMEAKSGAKIAIRGKGSVKEGKGRSDPSVRGNMEEDL 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,650,040
Number of Sequences: 5004
Number of extensions: 52273
Number of successful extensions: 172
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)